View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0767_low_44 (Length: 251)

Name: NF0767_low_44
Description: NF0767
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0767_low_44
NF0767_low_44
[»] chr1 (6 HSPs)
chr1 (14-251)||(13879249-13879486)
chr1 (18-73)||(4038892-4038947)
chr1 (18-74)||(30157913-30157969)
chr1 (14-50)||(30143267-30143303)
chr1 (98-140)||(30143494-30143536)
chr1 (108-140)||(49266401-49266433)
[»] chr7 (5 HSPs)
chr7 (18-74)||(10271190-10271246)
chr7 (18-74)||(11320199-11320255)
chr7 (108-140)||(10271343-10271375)
chr7 (108-140)||(11320417-11320449)
chr7 (108-140)||(25801025-25801057)
[»] chr3 (3 HSPs)
chr3 (14-74)||(13474196-13474256)
chr3 (18-74)||(3421748-3421804)
chr3 (98-140)||(13473867-13473909)
[»] chr8 (1 HSPs)
chr8 (18-74)||(24410872-24410928)
[»] chr4 (2 HSPs)
chr4 (18-74)||(10728035-10728091)
chr4 (18-74)||(10941804-10941860)
[»] chr6 (1 HSPs)
chr6 (99-140)||(10928971-10929012)
[»] chr5 (3 HSPs)
chr5 (99-140)||(3159607-3159648)
chr5 (99-140)||(38937987-38938028)
chr5 (104-140)||(28604876-28604912)


Alignment Details
Target: chr1 (Bit Score: 218; Significance: 1e-120; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 14 - 251
Target Start/End: Complemental strand, 13879486 - 13879249
Alignment:
Q  14 agggttcaatgtcatcatcggcaccgacgttacatacgttgctgaagatatattgcctttagattaatccataaaataattcagtaaagtcaaataattt 113  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13879486 agggttcaatgtcatcatcagcaccgacgttacatacgttgctgaagatatattgcctttagattaatccataaaataattcagtaaagtcaaataattt 13879387  T
Q  114 tatagattatttgactttgctggtttacatacttacttttcacaccgcgacaaccgcaatctgtatcacaaaccttaattgtgaaatatgcgatcttgac 213  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13879386 tatagattatttgactttgctagtttacatacttacttttcacaccgcgacaaccgcaatctgtatcacaaaccttaattgtgaaatatgcgatcttgac 13879287  T
Q  214 cgtgaccgttatttaaaaccttgtagtcatatgctagt 251  Q
    || |||||||||||||||||||| | ||||||||||||    
T  13879286 cgcgaccgttatttaaaaccttgaaatcatatgctagt 13879249  T

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Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 18 - 73
Target Start/End: Original strand, 4038892 - 4038947
Alignment:
Q  18 ttcaatgtcatcatcggcaccgacgttacatacgttgctgaagatatattgccttt 73  Q
    |||||||||||||||||||| |||||||||||||||||||||| ||||||||||||    
T  4038892 ttcaatgtcatcatcggcactgacgttacatacgttgctgaagctatattgccttt 4038947  T

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Target: chr1; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 18 - 74
Target Start/End: Original strand, 30157913 - 30157969
Alignment:
Q  18 ttcaatgtcatcatcggcaccgacgttacatacgttgctgaagatatattgccttta 74  Q
    |||||||||||||||||||||||| |||||||||||| ||||| |||||||||||||    
T  30157913 ttcaatgtcatcatcggcaccgacattacatacgttgttgaagctatattgccttta 30157969  T

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Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 14 - 50
Target Start/End: Original strand, 30143267 - 30143303
Alignment:
Q  14 agggttcaatgtcatcatcggcaccgacgttacatac 50  Q
    |||||||||||||||||||||||||||||||||||||    
T  30143267 agggttcaatgtcatcatcggcaccgacgttacatac 30143303  T

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Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 98 - 140
Target Start/End: Complemental strand, 30143536 - 30143494
Alignment:
Q  98 taaagtcaaataattttatagattatttgactttgctggttta 140  Q
    ||||||||| ||||||||| |||||||||||||||||||||||    
T  30143536 taaagtcaattaattttatggattatttgactttgctggttta 30143494  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 108 - 140
Target Start/End: Original strand, 49266401 - 49266433
Alignment:
Q  108 taattttatagattatttgactttgctggttta 140  Q
    ||||||||| |||||||||||||||||||||||    
T  49266401 taattttatggattatttgactttgctggttta 49266433  T

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Target: chr7 (Bit Score: 49; Significance: 4e-19; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 18 - 74
Target Start/End: Original strand, 10271190 - 10271246
Alignment:
Q  18 ttcaatgtcatcatcggcaccgacgttacatacgttgctgaagatatattgccttta 74  Q
    ||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||    
T  10271190 ttcaatgtcatcatcggcaccgacgttacatacgttgatgaagctatattgccttta 10271246  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 74
Target Start/End: Original strand, 11320199 - 11320255
Alignment:
Q  18 ttcaatgtcatcatcggcaccgacgttacatacgttgctgaagatatattgccttta 74  Q
    |||||||||||||||||||||||| ||||| || ||||||||| |||| || |||||    
T  11320199 ttcaatgtcatcatcggcaccgacattacaaactttgctgaagctataatgtcttta 11320255  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 108 - 140
Target Start/End: Complemental strand, 10271375 - 10271343
Alignment:
Q  108 taattttatagattatttgactttgctggttta 140  Q
    |||||||||| ||||||||||||||||||||||    
T  10271375 taattttatatattatttgactttgctggttta 10271343  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 108 - 140
Target Start/End: Complemental strand, 11320449 - 11320417
Alignment:
Q  108 taattttatagattatttgactttgctggttta 140  Q
    ||||||||| |||||||||||||||||||||||    
T  11320449 taattttatggattatttgactttgctggttta 11320417  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 108 - 140
Target Start/End: Complemental strand, 25801057 - 25801025
Alignment:
Q  108 taattttatagattatttgactttgctggttta 140  Q
    |||||||| ||||||||||||||||||||||||    
T  25801057 taattttaaagattatttgactttgctggttta 25801025  T

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Target: chr3 (Bit Score: 49; Significance: 4e-19; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 14 - 74
Target Start/End: Complemental strand, 13474256 - 13474196
Alignment:
Q  14 agggttcaatgtcatcatcggcaccgacgttacatacgttgctgaagatatattgccttta 74  Q
    |||||||||||||||||||| || ||||||||||||||||||||||| |||||||||||||    
T  13474256 agggttcaatgtcatcatcgacatcgacgttacatacgttgctgaagctatattgccttta 13474196  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 18 - 74
Target Start/End: Original strand, 3421748 - 3421804
Alignment:
Q  18 ttcaatgtcatcatcggcaccgacgttacatacgttgctgaagatatattgccttta 74  Q
    ||||||||||||||| ||||||||||||||||||| | ||||| |||||||| ||||    
T  3421748 ttcaatgtcatcatcagcaccgacgttacatacgtggttgaagctatattgctttta 3421804  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 98 - 140
Target Start/End: Original strand, 13473867 - 13473909
Alignment:
Q  98 taaagtcaaataattttatagattatttgactttgctggttta 140  Q
    ||||||| | ||||||||| |||||||||||||||||||||||    
T  13473867 taaagtcgattaattttatggattatttgactttgctggttta 13473909  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 18 - 74
Target Start/End: Complemental strand, 24410928 - 24410872
Alignment:
Q  18 ttcaatgtcatcatcggcaccgacgttacatacgttgctgaagatatattgccttta 74  Q
    ||||||||||||||||||||||| ||| ||||||||| ||||| |||||||||||||    
T  24410928 ttcaatgtcatcatcggcaccgaggttgcatacgttgttgaagctatattgccttta 24410872  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 18 - 74
Target Start/End: Complemental strand, 10728091 - 10728035
Alignment:
Q  18 ttcaatgtcatcatcggcaccgacgttacatacgttgctgaagatatattgccttta 74  Q
    |||||||||||||||||||||||| |||||||||||| |||| ||| ||| ||||||    
T  10728091 ttcaatgtcatcatcggcaccgaccttacatacgttgttgaaaatacattaccttta 10728035  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 18 - 74
Target Start/End: Complemental strand, 10941860 - 10941804
Alignment:
Q  18 ttcaatgtcatcatcggcaccgacgttacatacgttgctgaagatatattgccttta 74  Q
    |||||||||||||||||||||||| |||||||||||| |||| ||| ||| ||||||    
T  10941860 ttcaatgtcatcatcggcaccgaccttacatacgttgttgaaaatacattaccttta 10941804  T

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Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 99 - 140
Target Start/End: Original strand, 10928971 - 10929012
Alignment:
Q  99 aaagtcaaataattttatagattatttgactttgctggttta 140  Q
    |||||| | ||||||||| |||||||||||||||||||||||    
T  10928971 aaagtcgattaattttatggattatttgactttgctggttta 10929012  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 99 - 140
Target Start/End: Complemental strand, 3159648 - 3159607
Alignment:
Q  99 aaagtcaaataattttatagattatttgactttgctggttta 140  Q
    |||||| | ||||||||| |||||||||||||||||||||||    
T  3159648 aaagtcgattaattttatggattatttgactttgctggttta 3159607  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 99 - 140
Target Start/End: Complemental strand, 38938028 - 38937987
Alignment:
Q  99 aaagtcaaataattttatagattatttgactttgctggttta 140  Q
    |||||| | ||||||||| |||||||||||||||||||||||    
T  38938028 aaagtcgattaattttatggattatttgactttgctggttta 38937987  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 104 - 140
Target Start/End: Original strand, 28604876 - 28604912
Alignment:
Q  104 caaataattttatagattatttgactttgctggttta 140  Q
    ||||| ||||||| |||||||||||||||||||||||    
T  28604876 caaatgattttatggattatttgactttgctggttta 28604912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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