View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0767_low_45 (Length: 251)
Name: NF0767_low_45
Description: NF0767
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0767_low_45 |
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| [»] scaffold0430 (1 HSPs) |
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Alignment Details
Target: scaffold0430 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: scaffold0430
Description:
Target: scaffold0430; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 1200 - 1425
Alignment:
| Q |
1 |
actacttgttgttatttattagatgcatggctatatgtgctcatgacattactcattagattgatgtttgtaatatctgcaaaataaagattatgattgt |
100 |
Q |
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||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
1200 |
actacttgttgttatttatcagatgcatggatatatgtgctcatgacattactcattagattgatgtttgtaatat-tgcaaaataaagattatgattgt |
1298 |
T |
|
| Q |
101 |
tatcttgccatcgattatgaatgtttttc-agtagccaagctgggatatggtcttgaagctaatagtcatgttctagtgtaatattaagaaatagtaaat |
199 |
Q |
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| T |
1299 |
tctcttgccatcgattatgattgtttttccagtagccaagctgggatatggtcttgaaactaatagtcatgttctcgtgtaataataagaaatagtaaat |
1398 |
T |
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| Q |
200 |
ttgatttggttctaactaatatatgat |
226 |
Q |
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||||||||||||||||||||||||||| |
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| T |
1399 |
ttgatttggttctaactaatatatgat |
1425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 57; Significance: 7e-24; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 1 - 133
Target Start/End: Original strand, 14173018 - 14173150
Alignment:
| Q |
1 |
actacttgttgttatttattagatgcatggctatatgtgctcatgacattactcattagattgatgtttgtaatatctgcaaaataaagattatgattgt |
100 |
Q |
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||||||||| ||| || || |||||||||||||| ||| || || ||||||| || |||||||||||||||||| |||| |||||||||||||||||| |
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| T |
14173018 |
actacttgtggttgttaatcagatgcatggctatccgtgttcctggcattactgttttgattgatgtttgtaatatatgcataataaagattatgattgt |
14173117 |
T |
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| Q |
101 |
tatcttgccatcgattatgaatgtttttcagta |
133 |
Q |
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| T |
14173118 |
tcttttgtcattgattatgattgtttttcagta |
14173150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 172
Target Start/End: Complemental strand, 51184090 - 51183912
Alignment:
| Q |
1 |
actacttgttgttatttattagatgcatggctatatgtgctcatgacattactcattagattgatgtttgtaatatctgcaaaataaagattatgattgt |
100 |
Q |
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||||||||| |||||| || |||||||||||||| ||| | || ||||||| || |||||||||||||||||| |||| |||||||||||||||||| |
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| T |
51184090 |
actacttgtggttattaatcagatgcatggctatccgtgtccctggcattactgttttgattgatgtttgtaatatatgcataataaagattatgattgt |
51183991 |
T |
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| Q |
101 |
tatcttgccatcgattatgaatgttttt-------cagtagccaagctgggatatggtcttgaagctaatagtcatgtt |
172 |
Q |
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| T |
51183990 |
tcttttgtcgttgattatgattgcttttcagtacacagtagccaagttgggatatggtcctgaagctaatggtcctgtt |
51183912 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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