View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0767_low_46 (Length: 251)
Name: NF0767_low_46
Description: NF0767
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0767_low_46 |
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Alignment Details
Target: chr2 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 44907993 - 44907769
Alignment:
| Q |
1 |
cttgattgcagcaacaaattttgcaactgtgtgtggactctttctcttgtcttttttagcaagcttgagaatttctaatctgtgtttggctatggagatt |
100 |
Q |
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| T |
44907993 |
cttgattgcagcaacaaattttgcaactgtgtgtggactctttctcttgtcttttttagcaagcttgagaatttctaatctgtgtttggctatggagatt |
44907894 |
T |
|
| Q |
101 |
cccatgctttggagaaactcatggttgaagtaaaacatgtcttcttcttcaagctcgttttgtgcaaagacaaggccatactcatatacaagagatggct |
200 |
Q |
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| T |
44907893 |
cccatgctttggagaaactcatggttgaagtaaaacatgtcttcttcttcaagctcgttttgtgcaaagacaaggccatactcatatacaagagatggct |
44907794 |
T |
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| Q |
201 |
caagattggtttttgatagccatga |
225 |
Q |
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| T |
44907793 |
caagattggtttttgatagccatga |
44907769 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 60 - 131
Target Start/End: Original strand, 22537599 - 22537670
Alignment:
| Q |
60 |
caagcttgagaatttctaatctgtgtttggctatggagattcccatgctttggagaaactcatggttgaagt |
131 |
Q |
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| T |
22537599 |
caagattgagaatttctagcctgtgtttggctattgaaattcccatgctttgaagaaactcgtggttgaagt |
22537670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 89; Significance: 5e-43; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 50 - 222
Target Start/End: Original strand, 2051633 - 2051805
Alignment:
| Q |
50 |
tcttttttagcaagcttgagaatttctaatctgtgtttggctatggagattcccatgctttggagaaactcatggttgaagtaaaacatgtcttcttctt |
149 |
Q |
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| T |
2051633 |
tcttttcttgcaagtttgagaatttctagcctgtgtttggctatggagattcccatgctttggagaaattcatggttgaagtaaaccatgtcttcttgtt |
2051732 |
T |
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| Q |
150 |
caagctcgttttgtgcaaagacaaggccatactcatatacaagagatggctcaagattggtttttgatagcca |
222 |
Q |
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| T |
2051733 |
ctagctcattgtgtgcaaaagtgagaccatactcatacacaagagatggatcaaggtttgtttttgaaagcca |
2051805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 65 - 133
Target Start/End: Complemental strand, 48069900 - 48069832
Alignment:
| Q |
65 |
ttgagaatttctaatctgtgtttggctatggagattcccatgctttggagaaactcatggttgaagtaa |
133 |
Q |
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|||||||| |||| ||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| |
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| T |
48069900 |
ttgagaatctctagtctgtgtttggctattgagattcccatgctttgtagaaactcatggttgaagtaa |
48069832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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