View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0767_low_49 (Length: 249)

Name: NF0767_low_49
Description: NF0767
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0767_low_49
NF0767_low_49
[»] chr4 (1 HSPs)
chr4 (6-146)||(20125099-20125238)
[»] chr2 (6 HSPs)
chr2 (121-154)||(37200342-37200375)
chr2 (119-154)||(38935938-38935973)
chr2 (126-154)||(85698-85726)
chr2 (126-154)||(5970782-5970810)
chr2 (126-154)||(39094199-39094227)
chr2 (126-154)||(41305881-41305909)
[»] chr8 (5 HSPs)
chr8 (115-153)||(4105040-4105078)
chr8 (124-154)||(39808647-39808677)
chr8 (126-154)||(4105308-4105336)
chr8 (126-154)||(40652682-40652710)
chr8 (126-154)||(43945413-43945441)
[»] chr7 (1 HSPs)
chr7 (126-154)||(16902365-16902393)
[»] chr6 (1 HSPs)
chr6 (126-154)||(17441402-17441430)
[»] chr1 (2 HSPs)
chr1 (126-154)||(30659570-30659598)
chr1 (126-154)||(46561542-46561570)


Alignment Details
Target: chr4 (Bit Score: 125; Significance: 2e-64; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 6 - 146
Target Start/End: Original strand, 20125099 - 20125238
Alignment:
Q  6 aacaatcaatttgtagtttgaaatattaattacataccaaagcagggccggcccaatgtattttgaggcctaaatcaaaatttaagatgggaaagtaata 105  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  20125099 aacaatcaatttgtagtttgaaatattcattacataccaaagcagggccggcccaatgtattttgaggcctaaatc-aaatttaagatgggaaagtaata 20125197  T
Q  106 gtaatattttattttatattgggttaataggtctttacccc 146  Q
    |||||||||||||||||||||||||||||||| ||||||||    
T  20125198 gtaatattttattttatattgggttaataggtatttacccc 20125238  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 121 - 154
Target Start/End: Original strand, 37200342 - 37200375
Alignment:
Q  121 atattgggttaataggtctttacccctgtaatat 154  Q
    ||||||||||||||||||||||||||||||||||    
T  37200342 atattgggttaataggtctttacccctgtaatat 37200375  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 119 - 154
Target Start/End: Original strand, 38935938 - 38935973
Alignment:
Q  119 ttatattgggttaataggtctttacccctgtaatat 154  Q
    |||| |||||||||||||||||||||||||||||||    
T  38935938 ttattttgggttaataggtctttacccctgtaatat 38935973  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 126 - 154
Target Start/End: Complemental strand, 85726 - 85698
Alignment:
Q  126 gggttaataggtctttacccctgtaatat 154  Q
    |||||||||||||||||||||||||||||    
T  85726 gggttaataggtctttacccctgtaatat 85698  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 126 - 154
Target Start/End: Complemental strand, 5970810 - 5970782
Alignment:
Q  126 gggttaataggtctttacccctgtaatat 154  Q
    |||||||||||||||||||||||||||||    
T  5970810 gggttaataggtctttacccctgtaatat 5970782  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 126 - 154
Target Start/End: Original strand, 39094199 - 39094227
Alignment:
Q  126 gggttaataggtctttacccctgtaatat 154  Q
    |||||||||||||||||||||||||||||    
T  39094199 gggttaataggtctttacccctgtaatat 39094227  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 126 - 154
Target Start/End: Original strand, 41305881 - 41305909
Alignment:
Q  126 gggttaataggtctttacccctgtaatat 154  Q
    |||||||||||||||||||||||||||||    
T  41305881 gggttaataggtctttacccctgtaatat 41305909  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 115 - 153
Target Start/End: Original strand, 4105040 - 4105078
Alignment:
Q  115 tattttatattgggttaataggtctttacccctgtaata 153  Q
    |||||||||||||||||||| ||||||||| ||||||||    
T  4105040 tattttatattgggttaataagtctttacctctgtaata 4105078  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 124 - 154
Target Start/End: Original strand, 39808647 - 39808677
Alignment:
Q  124 ttgggttaataggtctttacccctgtaatat 154  Q
    |||||||||||||||||||||||||||||||    
T  39808647 ttgggttaataggtctttacccctgtaatat 39808677  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 126 - 154
Target Start/End: Complemental strand, 4105336 - 4105308
Alignment:
Q  126 gggttaataggtctttacccctgtaatat 154  Q
    |||||||||||||||||||||||||||||    
T  4105336 gggttaataggtctttacccctgtaatat 4105308  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 126 - 154
Target Start/End: Complemental strand, 40652710 - 40652682
Alignment:
Q  126 gggttaataggtctttacccctgtaatat 154  Q
    |||||||||||||||||||||||||||||    
T  40652710 gggttaataggtctttacccctgtaatat 40652682  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 126 - 154
Target Start/End: Complemental strand, 43945441 - 43945413
Alignment:
Q  126 gggttaataggtctttacccctgtaatat 154  Q
    |||||||||||||||||||||||||||||    
T  43945441 gggttaataggtctttacccctgtaatat 43945413  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 126 - 154
Target Start/End: Complemental strand, 16902393 - 16902365
Alignment:
Q  126 gggttaataggtctttacccctgtaatat 154  Q
    |||||||||||||||||||||||||||||    
T  16902393 gggttaataggtctttacccctgtaatat 16902365  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 126 - 154
Target Start/End: Original strand, 17441402 - 17441430
Alignment:
Q  126 gggttaataggtctttacccctgtaatat 154  Q
    |||||||||||||||||||||||||||||    
T  17441402 gggttaataggtctttacccctgtaatat 17441430  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 126 - 154
Target Start/End: Complemental strand, 30659598 - 30659570
Alignment:
Q  126 gggttaataggtctttacccctgtaatat 154  Q
    |||||||||||||||||||||||||||||    
T  30659598 gggttaataggtctttacccctgtaatat 30659570  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 126 - 154
Target Start/End: Complemental strand, 46561570 - 46561542
Alignment:
Q  126 gggttaataggtctttacccctgtaatat 154  Q
    |||||||||||||||||||||||||||||    
T  46561570 gggttaataggtctttacccctgtaatat 46561542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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