View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0767_low_55 (Length: 248)
Name: NF0767_low_55
Description: NF0767
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0767_low_55 |
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Alignment Details
Target: chr4 (Bit Score: 69; Significance: 4e-31; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 15 - 91
Target Start/End: Original strand, 54219125 - 54219201
Alignment:
| Q |
15 |
tccaacaatatctgaaaaagaacataatttgagagaagatttgatacagcaaggcaaagaatctgatgtcaagtctt |
91 |
Q |
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| T |
54219125 |
tccatcaaaatctgaaaaagaacataatttgagagaagatttgatacagcaaggcaaagaatctgatgtcaagtctt |
54219201 |
T |
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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 36 - 91
Target Start/End: Original strand, 31217546 - 31217601
Alignment:
| Q |
36 |
acataatttgagagaagatttgatacagcaaggcaaagaatctgatgtcaagtctt |
91 |
Q |
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|||| |||||||||||||||||| ||||||||||| |||||||||||| |||||| |
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| T |
31217546 |
acatgatttgagagaagatttgaaacagcaaggcagtgaatctgatgtccagtctt |
31217601 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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