View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0767_low_57 (Length: 248)
Name: NF0767_low_57
Description: NF0767
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0767_low_57 |
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Alignment Details
Target: chr2 (Bit Score: 84; Significance: 5e-40; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 44565238 - 44565321
Alignment:
| Q |
1 |
caagggccttcttttgtctatctggctccggttttggctatcatcaactcacctgagtttcaagagttgaatgaaaatgtatgt |
84 |
Q |
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| T |
44565238 |
caagggccttcttttgtctatctggctccggttttggctatcatcaactcacctgagtttcaagagttgaatgaaaatgtatgt |
44565321 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 151 - 230
Target Start/End: Original strand, 44565388 - 44565467
Alignment:
| Q |
151 |
gtaaccaaaattgttccttgaagtttcaaggattatatggaatgtgtgtgtattttcatttttatgttttagttgatgat |
230 |
Q |
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| T |
44565388 |
gtaaccaaaattgttccttgaagtttcaaggattatatggaatgtgtgtgtattttcatttttatgttttagttgatgat |
44565467 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 36035855 - 36035772
Alignment:
| Q |
1 |
caagggccttcttttgtctatctggctccggttttggctatcatcaactcacctgagtttcaagagttgaatgaaaatgtatgt |
84 |
Q |
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| T |
36035855 |
caagggccttcttttgtttatctggctccagttttggcgatcatcaactcacccgagtttcaaggattgaatgaaaatgtatgt |
36035772 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 172 - 230
Target Start/End: Complemental strand, 36035631 - 36035572
Alignment:
| Q |
172 |
agtttcaaggattatatggaatgtgtgtgtatttt-catttttatgttttagttgatgat |
230 |
Q |
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| T |
36035631 |
agttttaaggattaagtggaatgtgtgtgtattttatatttttatgttttagatgatgat |
36035572 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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