View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0767_low_6 (Length: 560)
Name: NF0767_low_6
Description: NF0767
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0767_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 467; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 467; E-Value: 0
Query Start/End: Original strand, 1 - 509
Target Start/End: Original strand, 49104540 - 49105051
Alignment:
| Q |
1 |
ttgatgttgaaatataatgtgattggatgtctgtataatactattaattaaattcataaataaatacacgcatgtaaccacatgctatattacacggtag |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49104540 |
ttgatgttgaaatataatgtgattggatgtctgtataatactattaattaaattcataaataaatacacgcatgtaaccacatgctatattacacggtag |
49104639 |
T |
|
| Q |
101 |
tattatacctgtggtaggaaagctttcctgataccgtagtttgcatcgacatctaaacgtcctccaagccctataggaatggtctgcctgtatctacatc |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49104640 |
tattatacctgtggtaggaaagctttcctgataccgtagtttgcatcgacatctaaacgtcctccaagccctataggaatggtctgcctgtatctacatc |
49104739 |
T |
|
| Q |
201 |
ctcctgttgttgtcattccctaattcaatcaagtggcgtatatgtcagatacaatccattaacaagaattattattgaattaataatacacttccccaat |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49104740 |
ctcctgttgttgtcattccctaattcaatcaagtggcgtatatgtcagatacaatccattaacaagaattattattgaattaataatacacttccccaat |
49104839 |
T |
|
| Q |
301 |
tgttgcgcatttatttacttcgataaaatgtctttttaatgtgggactcataacacaatattcggtgacagtatgaaaacgg---gnnnnnnnnnctaat |
397 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| | |
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| T |
49104840 |
tgttgcgcatttatttacttcgataaaatgtctttttaatgtgggactcataacacaatattcggtgacagtatgaaaacgggaagaaaaaaaaactatt |
49104939 |
T |
|
| Q |
398 |
acctgatctataattggaagatatccaccaacatttgggagtatggtaccatttggtagtattccaccctctcctccaactccaacagcaatatcatctc |
497 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49104940 |
acctgatctataattggaagatatccaccaacatttgggagtatggtaccatttggtagtattccaccctctcctccaactccaacagcaatatcatctc |
49105039 |
T |
|
| Q |
498 |
tccccatcatgt |
509 |
Q |
| |
|
|||||||||||| |
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|
| T |
49105040 |
tccccatcatgt |
49105051 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 398 - 509
Target Start/End: Original strand, 18133629 - 18133740
Alignment:
| Q |
398 |
acctgatctataattggaagatatccaccaacatttgggagtatggtaccatttggtagtattccaccctctcctccaactccaacagcaatatcatctc |
497 |
Q |
| |
|
||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||| || |||| ||||||||||| |||||||| |
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| T |
18133629 |
acctgttctataattggtagatatccaccaacatttgggagtatggtaccatttgacagtattccaccctcaccaccaattccaacagcaacatcatctc |
18133728 |
T |
|
| Q |
498 |
tccccatcatgt |
509 |
Q |
| |
|
|||||||||||| |
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|
| T |
18133729 |
tccccatcatgt |
18133740 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 398 - 509
Target Start/End: Original strand, 49120839 - 49120950
Alignment:
| Q |
398 |
acctgatctataattggaagatatccaccaacatttgggagtatggtaccatttggtagtattccaccctctcctccaactccaacagcaatatcatctc |
497 |
Q |
| |
|
||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||| || |||| ||||||||||| |||||||| |
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|
| T |
49120839 |
acctgttctataattggtagatatccaccaacatttgggagtatggtaccatttgacagtattccaccctcaccaccaattccaacagcaacatcatctc |
49120938 |
T |
|
| Q |
498 |
tccccatcatgt |
509 |
Q |
| |
|
|||||||||||| |
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|
| T |
49120939 |
tccccatcatgt |
49120950 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 105 - 229
Target Start/End: Original strand, 49117016 - 49117140
Alignment:
| Q |
105 |
atacctgtggtaggaaagctttcctgataccgtagtttgcatcgacatctaaacgtcctccaagccctataggaatggtctgcctgtatctacatcctcc |
204 |
Q |
| |
|
|||||||||| ||||||| |||||||||||| || |||||||| | |||||| ||||||||||| |||| ||||||| |||||||||||| || ||||| |
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|
| T |
49117016 |
atacctgtgggaggaaagatttcctgataccataatttgcatcaatatctaagcgtcctccaagtcctacgggaatggcctgcctgtatctgcagcctcc |
49117115 |
T |
|
| Q |
205 |
tgttgttgtcattccctaattcaat |
229 |
Q |
| |
|
| ||||||||||||||| ||||||| |
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|
| T |
49117116 |
tattgttgtcattccctgattcaat |
49117140 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 78; Significance: 4e-36; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 396 - 509
Target Start/End: Complemental strand, 6955108 - 6954995
Alignment:
| Q |
396 |
atacctgatctataattggaagatatccaccaacatttgggagtatggtaccatttggtagtattccaccctctcctccaactccaacagcaatatcatc |
495 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||| || ||||||||||||||||| || |||||||| || ||||| |||||||||||||| ||||| |
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|
| T |
6955108 |
atacctgttctataattggaagatatccaccaacattaggaagtatggtaccatttgggagaattccaccttcacctcccactccaacagcaatgtcatc |
6955009 |
T |
|
| Q |
496 |
tctccccatcatgt |
509 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
6955008 |
tctccccatcatgt |
6954995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 441 - 509
Target Start/End: Complemental strand, 6964791 - 6964723
Alignment:
| Q |
441 |
tggtaccatttggtagtattccaccctctcctccaactccaacagcaatatcatctctccccatcatgt |
509 |
Q |
| |
|
||||||||||||| || |||||||| || ||||| |||||||||||||| ||||||||||||||||||| |
|
|
| T |
6964791 |
tggtaccatttgggagaattccaccttcacctcccactccaacagcaatgtcatctctccccatcatgt |
6964723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 396 - 443
Target Start/End: Complemental strand, 6965232 - 6965185
Alignment:
| Q |
396 |
atacctgatctataattggaagatatccaccaacatttgggagtatgg |
443 |
Q |
| |
|
||||||| || || |||||||||||||||||||||||||| ||||||| |
|
|
| T |
6965232 |
atacctgttcaatgattggaagatatccaccaacatttggaagtatgg |
6965185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 101 - 232
Target Start/End: Complemental strand, 6965926 - 6965795
Alignment:
| Q |
101 |
tattatacctgtggtaggaaagctttcctgataccgtagtttgcatcgacatctaaacgtcctccaagccctataggaatggtctgcctgtatctacatc |
200 |
Q |
| |
|
||||||||| |||| ||||||||||| | ||| || ||||| | ||||| ||| || || ||||||| || | ||| |||| |||||| ||||| || |
|
|
| T |
6965926 |
tattatacccgtggaaggaaagctttacggatgccatagttagtatcgatatccaagcgacctccaaaaccaacaggtatggcctgcctatatctgcaat |
6965827 |
T |
|
| Q |
201 |
ctcctgttgttgtcattccctaattcaatcaa |
232 |
Q |
| |
|
|||||| |||||||||||||| ||| |||||| |
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|
| T |
6965826 |
ctcctgctgttgtcattccctgattgaatcaa |
6965795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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