View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0767_low_8 (Length: 462)
Name: NF0767_low_8
Description: NF0767
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0767_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 400; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 14 - 433
Target Start/End: Original strand, 4047407 - 4047826
Alignment:
| Q |
14 |
agaaatgggacttaactcatataattgtgatgagtttattccaaaaactaattgtgtcggcatcatgaaaaattcaagaatccgagacaaccacacatag |
113 |
Q |
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| T |
4047407 |
agaaatgggacttaactcatataattgtgatgagtttattccaaaaactaattgtgtcggcatcatgaaaaattcaagaatccgagacaaccacacatag |
4047506 |
T |
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| Q |
114 |
atccccactaagtagacaagtggtaaacttgttttgtaggctatgaattttaataacagaattcaaatcttataattagtgaagtttaataacaaatctg |
213 |
Q |
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| T |
4047507 |
atccccactaagtagacaagtcgtaaacttgttttgtaggctatgaattttaataacagaattcaaatcttataattagtgaagtttaataacaaatctg |
4047606 |
T |
|
| Q |
214 |
attatttttaagggttgttttgttcatttcactttcaaatattttttccatgaatgatggatttttagaatttaggttgtggccaactgaatccttcaat |
313 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
4047607 |
attatttttaagggttgttttgttcatttcactttcaaatattttttccatgaatgatggatttttagaatttgggttgtggccaactgaatccttcaat |
4047706 |
T |
|
| Q |
314 |
attgatttgtaagattgaattgccgctatttataaagttatatctagatcgaatcttatttaatatgtgacttttaatacatccatcatccacggcctcc |
413 |
Q |
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| T |
4047707 |
attgatttgtaagattgaattgctgctatttataaagttatatctagatcaaatcttatttaatatgtgactcttaatacatccatcatccacggcctcc |
4047806 |
T |
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| Q |
414 |
aacatgatctgagtgcccat |
433 |
Q |
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| T |
4047807 |
aacatgatctgagtgcccat |
4047826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 16 - 291
Target Start/End: Original strand, 4073607 - 4073886
Alignment:
| Q |
16 |
aaatgggacttaactcatataattgtgatgagtttattccaaaaactaattgtgtcggcatcatgaaaaattcaagaatccgagacaaccacacatagat |
115 |
Q |
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||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
4073607 |
aaatgggacctaacttatataattgtgatgagtttattccaaaaactaattgtgtcggcatcatgaaaaattcaagaatccgagacaaccacacataaat |
4073706 |
T |
|
| Q |
116 |
ccccactaagtagacaagtggtaaacttgttttgtaggctatgaattttaataacagaattcaaatctt---ataattagtgaagtttaataacaaatct |
212 |
Q |
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| T |
4073707 |
ccccactaagtagacaagtggtaaacttgttttgtaggctatgaattttaataacagatttgaaatcttgacataattagtgaagtttaataacaaatct |
4073806 |
T |
|
| Q |
213 |
gattat-ttttaagggttgttttgttcatttcactttcaaatattttttccatgaatgatgg-atttttagaatttaggtt |
291 |
Q |
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| T |
4073807 |
gattctcttttaagggttgttttgttcatttcactgtcaaatatttttt-catggatgatggaatttttagaatttgggtt |
4073886 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 343 - 392
Target Start/End: Original strand, 4073895 - 4073944
Alignment:
| Q |
343 |
ttataaagttatatctagatcgaatcttatttaatatgtgacttttaata |
392 |
Q |
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|||||||||||| |||||||| |||||||| | |||||||||||||||| |
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| T |
4073895 |
ttataaagttatgtctagatctaatcttatctggtatgtgacttttaata |
4073944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 16 - 433
Target Start/End: Complemental strand, 13940797 - 13940375
Alignment:
| Q |
16 |
aaatgggacttaactcatataattgtgatgagtttattccaaaaactaattgtgtcgg-----catcatgaaaaattcaagaatccgagacaaccacaca |
110 |
Q |
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| T |
13940797 |
aaatgggacctaactcatataattgtgatgagtttattccaaaaactaattgtgtcgggtcggcatcatgaaaaattcaagaatccgagacaaccacaca |
13940698 |
T |
|
| Q |
111 |
tagatccccactaagtagacaagtggtaaacttgttttgtaggctatgaattttaataacagaattcaaatcttataattagtgaagtttaataacaaat |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13940697 |
tagatccccactaagtagacaagtggtaaacttgttttgtaggctatgaattttaataacagaattcaaatcttataattagtgaagtttaataacaaat |
13940598 |
T |
|
| Q |
211 |
ctgattatttttaagggttgttttgttcatttcactttcaaatattttt---tccatgaatgatggatttttagaatttaggttgtggccaactgaatcc |
307 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||| ||||| | ||||||| || |||||||||||||| |||||||||||||||||||| |
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| T |
13940597 |
ctgattatttttaagggttgatttgttcatttcactttcaaatttttttttcttcatgaattatagatttttagaatttgggttgtggccaactgaatcc |
13940498 |
T |
|
| Q |
308 |
ttcaatattgatttgtaagattgaattgccgctatttataaagttatatctagatcgaatcttatttaatatgtgacttttaatacatccatcatccacg |
407 |
Q |
| |
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| T |
13940497 |
tacaatattgatttgt---attgaattgaagctatttataaagttatatctagatcgaatcttatttaatatgtgactcttaatacagccatcatccacg |
13940401 |
T |
|
| Q |
408 |
gcctccaacatgatctgagtgcccat |
433 |
Q |
| |
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|||||||||||||||||||||||||| |
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| T |
13940400 |
gcctccaacatgatctgagtgcccat |
13940375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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