View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0767_low_9 (Length: 458)
Name: NF0767_low_9
Description: NF0767
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0767_low_9 |
 | |
|
| [»] scaffold0021 (1 HSPs) |
| | |
|
| [»] scaffold0596 (1 HSPs) |
| | |
|
| [»] scaffold0323 (1 HSPs) |
| | |
|
| [»] scaffold0402 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 335; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 11 - 361
Target Start/End: Original strand, 11543009 - 11543358
Alignment:
| Q |
11 |
tagctgttgcacaatagaagaatgagttaggtgagaacagagaaagaaagagaggtagcgcaagagacaaaacaaagaggaggtttacaaaagacttaga |
110 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11543009 |
tagctgctgcacaatagaagaatgagttaggtgagaacaaagaaagaaagagaggtagcgcaagagacaaaacaaagaggaggtttacaaaagacttaga |
11543108 |
T |
|
| Q |
111 |
tgtgaaggaaattggaagaggcggtgatagaaagaagtaaatccttaacgttgaaggaattttggggcggtgaatcagaattttacagggctatatatag |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11543109 |
tgtgaaggaaattggaagaggcggtgatagaaagaagtaaatccttaacgttgaaggaattttggggcggtgaatcagaattttacagggctatatatag |
11543208 |
T |
|
| Q |
211 |
aacatcacagatcaaaggaagagagttcttttggggggagcagacgacacactacacagacactacatgcaacaaagagaagagctttggggatagaaat |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11543209 |
aacatcacagatcaaaggaagagagttcttttggggggagcagacgacacactacacagacactacatgcaacaaagagaagagctttggggatagaaat |
11543308 |
T |
|
| Q |
311 |
tgaagattcaagtcttggagcaagaattttcctttcttttaggttatttct |
361 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11543309 |
tgaa-attcaagtcttggagcaagaattttcctttcttttaggttatttct |
11543358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 263 - 361
Target Start/End: Complemental strand, 21432610 - 21432511
Alignment:
| Q |
263 |
tacacagacactacatgcaacaaagagaagagctttggggatagaaattgaagattcaagtcttggagcaagaa-ttttcctttcttttaggttatttct |
361 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| |
|
|
| T |
21432610 |
tacacagacactacatgcaacaaagagaagagctttggggatagaaattgaagattcaagtcttggagcaagaattttttctttcttttaggttatttct |
21432511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 303; Significance: 1e-170; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 11 - 361
Target Start/End: Original strand, 10889506 - 10889863
Alignment:
| Q |
11 |
tagctgttgcacaatagaagaatgagttaggtgagaacagagaaagaaagagaggtagcgcaagagacaaaacaaagaggaggtttacaaaagacttaga |
110 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10889506 |
tagctgctgcacaatagaagaatgagttaggtgagaacaaagaaagaaagagaggtagcgcaagagacaaaacaaagaggaggtttacaaaagacttaga |
10889605 |
T |
|
| Q |
111 |
tgtgaaggaaattggaagaggcggtgatagaaagaagtaaatccttaacgttgaaggaattttggggcggtgaatcagaattttacagggctatatatag |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10889606 |
tgtgaaggaaattggaagaggcggtgatagaaagaagtaaatccttaacgttgaaggaattttggggcggtgaatcagaattttacagggctatatatag |
10889705 |
T |
|
| Q |
211 |
aacatcacagatcaaaggaagagagttc---ttttggggggagcag----acgacacactacacagacactacatgcaacaaagagaagagctttgggga |
303 |
Q |
| |
|
| |||||||||||||||||||| ||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| || |
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|
| T |
10889706 |
agcatcacagatcaaaggaagaaagttctttttttggggggagcagactcacgacacactacacagacactacatgcaacaaagagaagagctttggaga |
10889805 |
T |
|
| Q |
304 |
tagaaattgaagattcaagtcttggagcaagaattttcctttcttttaggttatttct |
361 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10889806 |
tagaaattgaagattcgagtcttggagcaagaattttcctttcttttaggttatttct |
10889863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 128 - 361
Target Start/End: Complemental strand, 23165365 - 23165142
Alignment:
| Q |
128 |
gaggcggtgatagaaagaagtaaatccttaacgttgaaggaattttggggcggtgaatcagaattttacagggctatatatagaacatcacagatcaaag |
227 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||| |||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
23165365 |
gaggcggtgatagaaagaagtaaatccttaatgttgaaggaattttggggcggtaaatcggaattttacagggctatatatagagcatcacagatcaaag |
23165266 |
T |
|
| Q |
228 |
gaagagagttcttttggggggagcagacgacacactacacagacactacatgcaacaaagagaagagctttggggatagaaattgaagattcaagtcttg |
327 |
Q |
| |
|
|||| || |||||| ||||||| |||||||||||| |||| ||| || | ||||||||| ||| |||||||||||||||||||||||||||| |
|
|
| T |
23165265 |
gaaggcagatctttt--ggggagc-----acacactacacacacacaacacgctgc--agagaagag-ttttgggatagaaattgaagattcaagtcttg |
23165176 |
T |
|
| Q |
328 |
gagcaagaattttcctttcttttaggttatttct |
361 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
23165175 |
gagcaagaattttcctttcttttaggttatttct |
23165142 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 128 - 361
Target Start/End: Complemental strand, 23576622 - 23576399
Alignment:
| Q |
128 |
gaggcggtgatagaaagaagtaaatccttaacgttgaaggaattttggggcggtgaatcagaattttacagggctatatatagaacatcacagatcaaag |
227 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||| |||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
23576622 |
gaggcggtgatagaaagaagtaaatccttaatgttgaaggaattttggggcggtaaatcggaattttacagggctatatatagagcatcacagatcaaag |
23576523 |
T |
|
| Q |
228 |
gaagagagttcttttggggggagcagacgacacactacacagacactacatgcaacaaagagaagagctttggggatagaaattgaagattcaagtcttg |
327 |
Q |
| |
|
|||| || |||||| ||||||| |||||||||||| |||| ||| || | ||||||||| ||| |||||||||||||||||||||||||||| |
|
|
| T |
23576522 |
gaaggcagatctttt--ggggagc-----acacactacacacacacaacacgctgc--agagaagag-ttttgggatagaaattgaagattcaagtcttg |
23576433 |
T |
|
| Q |
328 |
gagcaagaattttcctttcttttaggttatttct |
361 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
23576432 |
gagcaagaattttcctttcttttaggttatttct |
23576399 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 11 - 139
Target Start/End: Complemental strand, 22407037 - 22406909
Alignment:
| Q |
11 |
tagctgttgcacaatagaagaatgagttaggtgagaacagagaaagaaagagaggtagcgcaagagacaaaacaaagaggaggtttacaaaagacttaga |
110 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22407037 |
tagctgctgcacaatagaagaatgagttaggtgagaacaaagaaagaaagagaggtagcgcaagagacaaaacaaagaggaggtttacaaaagacttaga |
22406938 |
T |
|
| Q |
111 |
tgtgaaggaaattggaagaggcggtgata |
139 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
22406937 |
tgtgaaggaaattggaagaggcggtgata |
22406909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 247 - 361
Target Start/End: Complemental strand, 22406675 - 22406561
Alignment:
| Q |
247 |
ggagcagacgacacactacacagacactacatgcaacaaagagaagagctttggggatagaaattgaagattcaagtcttggagcaagaattttcctttc |
346 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22406675 |
ggaggagacgacacactacacagacactacatgcaacaaagagaagagctttggggatagaaattgaagattcaagtcttggagcaagaattttcctttc |
22406576 |
T |
|
| Q |
347 |
ttttaggttatttct |
361 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
22406575 |
ttttaggttatttct |
22406561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0021 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: scaffold0021
Description:
Target: scaffold0021; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 11 - 361
Target Start/End: Original strand, 119014 - 119371
Alignment:
| Q |
11 |
tagctgttgcacaatagaagaatgagttaggtgagaacagagaaagaaagagaggtagcgcaagagacaaaacaaagaggaggtttacaaaagacttaga |
110 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
119014 |
tagctgctgcacaatagaagaatgagttaggtgagaacaaagaaagaaagagaggtagcgcaagagacaaaacaaagaggaggtttacaaaagacttaga |
119113 |
T |
|
| Q |
111 |
tgtgaaggaaattggaagaggcggtgatagaaagaagtaaatccttaacgttgaaggaattttggggcggtgaatcagaattttacagggctatatatag |
210 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
119114 |
tatgaaggaaattggaagaggcggtgatagaaagaagtaaatccttaacgttgaaggaattttggggcggtgaatcagaattttacagggctatatatag |
119213 |
T |
|
| Q |
211 |
aacatcacagatcaaaggaagagagttc---ttttggggggagcag----acgacacactacacagacactacatgcaacaaagagaagagctttgggga |
303 |
Q |
| |
|
| |||||||||||||||||||| ||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
119214 |
agcatcacagatcaaaggaagaaagttctttttttggggggagcagactcacgacacactacacagacactacatgcaacaaagagaagagctttggaga |
119313 |
T |
|
| Q |
304 |
tagaaattgaagattcaagtcttggagcaagaattttcctttcttttaggttatttct |
361 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
119314 |
tagaaattgaagattcgagtcttggagcaagaattttcctttcttttaggttatttct |
119371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0596 (Bit Score: 105; Significance: 3e-52; HSPs: 1)
Name: scaffold0596
Description:
Target: scaffold0596; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 257 - 361
Target Start/End: Complemental strand, 4546 - 4442
Alignment:
| Q |
257 |
acacactacacagacactacatgcaacaaagagaagagctttggggatagaaattgaagattcaagtcttggagcaagaattttcctttcttttaggtta |
356 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4546 |
acacactacacagacactacatgcaacaaagagaagagctttggggatagaaattgaagattcaagtcttggagcaagaattttcctttcttttaggtta |
4447 |
T |
|
| Q |
357 |
tttct |
361 |
Q |
| |
|
||||| |
|
|
| T |
4446 |
tttct |
4442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0323 (Bit Score: 104; Significance: 1e-51; HSPs: 1)
Name: scaffold0323
Description:
Target: scaffold0323; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 254 - 361
Target Start/End: Original strand, 10256 - 10363
Alignment:
| Q |
254 |
acgacacactacacagacactacatgcaacaaagagaagagctttggggatagaaattgaagattcaagtcttggagcaagaattttcctttcttttagg |
353 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
10256 |
acgacacactacacagacactacatgcaacaaagagaagagctttggggatagaaattgaagattcaagtcttggagtaagaattttcctttcttttagg |
10355 |
T |
|
| Q |
354 |
ttatttct |
361 |
Q |
| |
|
|||||||| |
|
|
| T |
10356 |
ttatttct |
10363 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0402 (Bit Score: 97; Significance: 2e-47; HSPs: 1)
Name: scaffold0402
Description:
Target: scaffold0402; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 257 - 361
Target Start/End: Complemental strand, 8420 - 8316
Alignment:
| Q |
257 |
acacactacacagacactacatgcaacaaagagaagagctttggggatagaaattgaagattcaagtcttggagcaagaattttcctttcttttaggtta |
356 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8420 |
acacattacacagacactacatgcaacaaagagaacagctttggggatagaaattgaagattcaagtcttggagcaagaattttcctttcttttaggtta |
8321 |
T |
|
| Q |
357 |
tttct |
361 |
Q |
| |
|
||||| |
|
|
| T |
8320 |
tttct |
8316 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 257 - 361
Target Start/End: Complemental strand, 14277393 - 14277283
Alignment:
| Q |
257 |
acacactacacagacactacatgcaacaaagagaagagctttgg-----ggatagaaattgaagattcaagtcttggagcaagaattt-tcctttctttt |
350 |
Q |
| |
|
||||| |||| ||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||| ||||| |||||||||| |
|
|
| T |
14277393 |
acacattacagagacactacatgcaacaaagagaagagctttggtttggggataggaattgaagattcaagtcttggagcaaaaatttcccctttctttt |
14277294 |
T |
|
| Q |
351 |
aggttatttct |
361 |
Q |
| |
|
||||||||||| |
|
|
| T |
14277293 |
aggttatttct |
14277283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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