View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0768_high_11 (Length: 422)
Name: NF0768_high_11
Description: NF0768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0768_high_11 |
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| [»] scaffold0147 (1 HSPs) |
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Alignment Details
Target: scaffold0147 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: scaffold0147
Description:
Target: scaffold0147; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 29 - 413
Target Start/End: Complemental strand, 8361 - 7989
Alignment:
| Q |
29 |
aaaagggtcttcatttctttgatgttaccaaagtagaaatgaggagaaggaccatcaataccttgcctatgaagctttgctcttagtgatcttggtctca |
128 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8361 |
aaaagggtcttcatttctttgatgttaccaaagtagaaatgaggagaaggaccatcaataccttgcctatgaagctttgctcttagtgatcttggtctca |
8262 |
T |
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| Q |
129 |
aaatcaaaacattcaaaaaatggatcaatgaaaccaaaactgctcctagagc---cacaagaacttcaataactatgctcattctcatacacaaattaac |
225 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8261 |
aaatcaaaacattcaaaaaatggatcaatgaaaccaaaactgctcctagagccatcacaagaacttcaataactatgctcattctcatacacaaattaac |
8162 |
T |
|
| Q |
226 |
ctcttccattacctattgttactttgctttcttctttcattttgtatcagattagaagtaaacgttccaaaacaatattgaaagtttgtttaatataata |
325 |
Q |
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|||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8161 |
ctcttccattacctattg-------------ttgtttcattttgtatcagattagaagtaaacgttccaaaacaatattgaaagtttgtttaatataata |
8075 |
T |
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| Q |
326 |
aatactccattctccaactattgttgctgaagacannnnnnnnnnaatctgttaactactctatagctgtcacctcttttagtataat |
413 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||| |
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| T |
8074 |
aatactccattctccaactattgttgctgaagacattttttttt--atctgttaactactctatagctgtcacctcttttagaataat |
7989 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 85; Significance: 2e-40; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 29 - 217
Target Start/End: Complemental strand, 19205334 - 19205146
Alignment:
| Q |
29 |
aaaagggtcttcatttctttgatgttaccaaagtagaaatgaggagaaggaccatcaataccttgcctatgaagctttgctcttagtgatcttggtctca |
128 |
Q |
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||||| |||||||| ||||| || ||||||||||| |||| ||||||||| |||| |||||| || ||||||||||||||||||| ||||||| |||||| |
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| T |
19205334 |
aaaagtgtcttcatctctttaatattaccaaagtaaaaatcaggagaaggtccatgaataccctgtctatgaagctttgctcttaatgatcttagtctca |
19205235 |
T |
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| Q |
129 |
aaatcaaaacattcaaaaaatggatcaatgaaaccaaaactgctcctagagccacaagaacttcaataactatgctcattctcatacac |
217 |
Q |
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||| ||||||| ||||||||||||| || |||||||||||| | ||||| || | |||||||| ||||||||||||||||| |||| |
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| T |
19205234 |
aaactaaaacatgtaaaaaatggatcagtgccaccaaaactgctacaagagcaaccataacttcaacaactatgctcattctcaaacac |
19205146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 82; Significance: 1e-38; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 29 - 210
Target Start/End: Complemental strand, 25192141 - 25191960
Alignment:
| Q |
29 |
aaaagggtcttcatttctttgatgttaccaaagtagaaatgaggagaaggaccatcaataccttgcctatgaagctttgctcttagtgatcttggtctca |
128 |
Q |
| |
|
||||||||||||||||||| ||| ||||| ||||| || ||||||||||| |||| |||||| |||||||| ||||||||||| | |||| |||||||| |
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| T |
25192141 |
aaaagggtcttcatttcttggatattacccaagtaaaagtgaggagaagggccatgaataccctgcctatgtagctttgctctcaatgattttggtctcc |
25192042 |
T |
|
| Q |
129 |
aaatcaaaacattcaaaaaatggatcaatgaaaccaaaactgctcctagagccacaagaacttcaataactatgctcattct |
210 |
Q |
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||| |||||| | ||||||||||||||||| |||||| |||||| | |||||||| | |||||||| | |||||||||||| |
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| T |
25192041 |
aaaccaaaacttgcaaaaaatggatcaatgcaaccaatactgctgcaagagccaccacaacttcaacacttatgctcattct |
25191960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 29 - 146
Target Start/End: Complemental strand, 1760489 - 1760372
Alignment:
| Q |
29 |
aaaagggtcttcatttctttgatgttaccaaagtagaaatgaggagaaggaccatcaataccttgcctatgaagctttgctcttagtgatcttggtctca |
128 |
Q |
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|||||| ||||||||||| |||||| ||||||||||| ||||||||||| |||||||| ||||| | |||||||| ||||| || |||||||| ||| |
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| T |
1760489 |
aaaaggctcttcatttctgagatgttgccaaagtagaagtgaggagaaggtccatcaattccttgtttttgaagcttagctctaagggatcttggcttca |
1760390 |
T |
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| Q |
129 |
aaatcaaaacattcaaaa |
146 |
Q |
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||| ||||||| ||||| |
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| T |
1760389 |
aaacaaaaacatgcaaaa |
1760372 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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