View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0768_high_28 (Length: 279)
Name: NF0768_high_28
Description: NF0768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0768_high_28 |
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| [»] chr1 (1 HSPs) |
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| [»] scaffold0074 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 170; Significance: 3e-91; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 98 - 279
Target Start/End: Original strand, 8696530 - 8696711
Alignment:
| Q |
98 |
tatgtgctggaacactataaaactgaagcactgaactaaaatagtgtttttggtttatacctattacctacattgatgtgtgcttagaagatttttggct |
197 |
Q |
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| T |
8696530 |
tatgtgctggaacactataaaactgaagcactgaactaacatagtgtttttggtttatacctattacctacattgatgtgtgcttagaagatttttggca |
8696629 |
T |
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| Q |
198 |
tatcctttactttgaatattcatttagaaaggttataataatgaatgtattgcaggtgtgactaataactaactactagaga |
279 |
Q |
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| T |
8696630 |
tatcctttactttgaatattcatttagaaaggttataataatgaatgtattacaggtgtgactaataactaactactagaga |
8696711 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0074 (Bit Score: 116; Significance: 5e-59; HSPs: 1)
Name: scaffold0074
Description:
Target: scaffold0074; HSP #1
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 98 - 279
Target Start/End: Original strand, 19270 - 19440
Alignment:
| Q |
98 |
tatgtgctggaacactataaaactgaagcactgaactaaaatagtgtttttggtttatacctattacctacattgatgtgtgcttagaagatttttggct |
197 |
Q |
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| T |
19270 |
tatgtgctggaacactataaaactgaagcactgaactaacatagtgttttttctttatac-----------attgatgtgtgcttagaagatttttggca |
19358 |
T |
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| Q |
198 |
tatcctttactttgaatattcatttagaaaggttataataatgaatgtattgcaggtgtgactaataactaactactagaga |
279 |
Q |
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| T |
19359 |
tatcctttactatgaatattcatttagaaaggttataataatgaatgtattacagatgtgactaataactaactactagaga |
19440 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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