View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0768_high_30 (Length: 268)
Name: NF0768_high_30
Description: NF0768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0768_high_30 |
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Alignment Details
Target: chr6 (Bit Score: 119; Significance: 7e-61; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 1 - 175
Target Start/End: Original strand, 11196184 - 11196358
Alignment:
| Q |
1 |
aaacatgaattaaaatattgatttggttgtcaacatgtgtggtgaatacatcttccatgtcggtaggaatgtgggtattccttgggattattatgtccat |
100 |
Q |
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|||||| ||||| |||||| |||||||||| | ||||||||||||||||| |||||| | || |||||| | ||||||||| ||||||||||| ||||| |
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| T |
11196184 |
aaacatcaattagaatattcatttggttgtgcaaatgtgtggtgaatacatgttccattttggcaggaattttggtattcctagggattattatttccat |
11196283 |
T |
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| Q |
101 |
aatccccccatgtttctccaatccaagggacaaaggaatgacctccgacaatagtaaatcttgaaccttctcact |
175 |
Q |
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| T |
11196284 |
aatccccccatgtttctccaatccaagggacaaaggaatgacctccgacaatagtaaatcttgaaccttctcact |
11196358 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 1 - 175
Target Start/End: Original strand, 11160599 - 11160772
Alignment:
| Q |
1 |
aaacatgaattaaaatattgatttggttgtcaacatgtgtggtgaatacatcttccatgtcggtaggaatgtgggtattccttgggattattatgtccat |
100 |
Q |
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| T |
11160599 |
aaacatgaattagaatattcatttggttgtgcaaatgtgtggtgaatacatgttccattttggcaggaattttggtattcctagggattattgtgttcat |
11160698 |
T |
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| Q |
101 |
aatccccccatgtttctccaatccaagggacaaaggaatgacctccgacaatagtaaatcttgaaccttctcact |
175 |
Q |
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| T |
11160699 |
aatccccccc-gagtctccaatccaagggacaaaggaatgacctccgacaatagtaaatcttgaaccttctcact |
11160772 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 1 - 162
Target Start/End: Original strand, 11155737 - 11155898
Alignment:
| Q |
1 |
aaacatgaattaaaatattgatttggttgtcaacatgtgtggtgaatacatcttccatgtcggtaggaatgtgggtattccttgggattattatgtccat |
100 |
Q |
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| T |
11155737 |
aaacatgaattagaatattcatttggttgtgcaaatgtgtggtgaatacatgttccattttggcaggaattttggtattcctagggattattgtgttcat |
11155836 |
T |
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| Q |
101 |
aatccccccatgtttctccaatccaagggacaaaggaatgacctccgacaatagtaaatctt |
162 |
Q |
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| T |
11155837 |
aatccccccatgagtctccaatccaagggacaaaggaatgacctccgacaattgtaaatctt |
11155898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 162
Target Start/End: Original strand, 11199180 - 11199341
Alignment:
| Q |
1 |
aaacatgaattaaaatattgatttggttgtcaacatgtgtggtgaatacatcttccatgtcggtaggaatgtgggtattccttgggattattatgtccat |
100 |
Q |
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| T |
11199180 |
aaacatgaattagaatattcatgtggttgtgcaaatgtgtggtgaatacatgttccattttggcaggaattttggtattcctagggattattgtgttcat |
11199279 |
T |
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| Q |
101 |
aatccccccatgtttctccaatccaagggacaaaggaatgacctccgacaatagtaaatctt |
162 |
Q |
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| T |
11199280 |
aatccccccatgagtctccaatccaagggacaaaggaatgacctccgacaattgtaaatctt |
11199341 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 115 - 175
Target Start/End: Complemental strand, 11242016 - 11241956
Alignment:
| Q |
115 |
tctccaatccaagggacaaaggaatgacctccgacaatagtaaatcttgaaccttctcact |
175 |
Q |
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| T |
11242016 |
tctccaatccaagggacaaagaaatgacctccgacaatagtaaatcttgaaccttctcact |
11241956 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 146
Target Start/End: Original strand, 11132455 - 11132600
Alignment:
| Q |
1 |
aaacatgaattaaaatattgatttggttgtcaacatgtgtggtgaatacatcttccatgtcggtaggaatgtgggtattccttgggattattatgtccat |
100 |
Q |
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|||||||||| ||||||||| ||||||| | || |||||| |||||||| | ||||||| ||||||||| ||||||||| || || ||| | ||| |
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| T |
11132455 |
aaacatgaatcaaaatattggtttggttatgaagatgtgttgtgaatacttgttccatgctggtaggaattaaggtattcctaggaatcattgttgacat |
11132554 |
T |
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| Q |
101 |
aatccccccatgtttctccaatccaagggacaaaggaatgacctcc |
146 |
Q |
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| T |
11132555 |
gattcccccatgtttctccaatccaagggataaaggaatgacctcc |
11132600 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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