View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0768_high_37 (Length: 250)

Name: NF0768_high_37
Description: NF0768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0768_high_37
NF0768_high_37
[»] chr5 (2 HSPs)
chr5 (52-140)||(16372587-16372675)
chr5 (1-38)||(16373200-16373237)
[»] chr4 (6 HSPs)
chr4 (52-139)||(12642042-12642129)
chr4 (52-131)||(51893117-51893196)
chr4 (1-38)||(12641505-12641542)
chr4 (83-131)||(12640748-12640796)
chr4 (93-139)||(12640626-12640672)
chr4 (83-131)||(51894169-51894217)
[»] chr2 (3 HSPs)
chr2 (52-139)||(17907338-17907425)
chr2 (1-38)||(17906814-17906851)
chr2 (83-131)||(17906355-17906403)
[»] chr1 (3 HSPs)
chr1 (138-177)||(26577239-26577278)
chr1 (88-141)||(43368870-43368923)
chr1 (200-240)||(26555484-26555524)
[»] chr7 (1 HSPs)
chr7 (93-139)||(47814675-47814721)
[»] chr3 (2 HSPs)
chr3 (89-139)||(55281835-55281885)
chr3 (90-139)||(44868655-44868704)


Alignment Details
Target: chr5 (Bit Score: 77; Significance: 8e-36; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 52 - 140
Target Start/End: Complemental strand, 16372675 - 16372587
Alignment:
Q  52 aaataacctgatcaactgccacatgtgggtaaaaacacaattttcccatggtgggaaagctttaaggttacccatgtgaacacacacca 140  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| ||||||||||||||||||||||    
T  16372675 aaataacctgatcaactgccacatgtgggtaaaaacacaattttcctatggtggaaaagctttaagattacccatgtgaacacacacca 16372587  T

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Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 16373237 - 16373200
Alignment:
Q  1 aatgttaaatttaactaacaaaagaaaattagacgtac 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  16373237 aatgttaaatttaactaacaaaagaaaattagacgtac 16373200  T

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Target: chr4 (Bit Score: 76; Significance: 3e-35; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 52 - 139
Target Start/End: Original strand, 12642042 - 12642129
Alignment:
Q  52 aaataacctgatcaactgccacatgtgggtaaaaacacaattttcccatggtgggaaagctttaaggttacccatgtgaacacacacc 139  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||    
T  12642042 aaataacctgatcaactgccatatgtgggtaaaaacacaattttcccatagtgggaaagctttaaggttacccatgtaaacacacacc 12642129  T

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Target: chr4; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 52 - 131
Target Start/End: Complemental strand, 51893196 - 51893117
Alignment:
Q  52 aaataacctgatcaactgccacatgtgggtaaaaacacaattttcccatggtgggaaagctttaaggttacccatgtgaa 131  Q
    ||||||||||||||| |||||| ||||||| ||||||||  ||||||||||||| ||||||||||||||| |||||||||    
T  51893196 aaataacctgatcaattgccacttgtgggtcaaaacacatctttcccatggtggaaaagctttaaggttaaccatgtgaa 51893117  T

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Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 12641505 - 12641542
Alignment:
Q  1 aatgttaaatttaactaacaaaagaaaattagacgtac 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  12641505 aatgttaaatttaactaacaaaagaaaattagacgtac 12641542  T

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Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 83 - 131
Target Start/End: Complemental strand, 12640796 - 12640748
Alignment:
Q  83 aaaacacaattttcccatggtgggaaagctttaaggttacccatgtgaa 131  Q
    ||||||||| |||||||||  ||||||||||||||||||||||||||||    
T  12640796 aaaacacaactttcccatgaagggaaagctttaaggttacccatgtgaa 12640748  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 93 - 139
Target Start/End: Original strand, 12640626 - 12640672
Alignment:
Q  93 tttcccatggtgggaaagctttaaggttacccatgtgaacacacacc 139  Q
    ||||||||||||||||||  ||||| || ||||||||||||||||||    
T  12640626 tttcccatggtgggaaaggattaagctttcccatgtgaacacacacc 12640672  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 83 - 131
Target Start/End: Original strand, 51894169 - 51894217
Alignment:
Q  83 aaaacacaattttcccatggtgggaaagctttaaggttacccatgtgaa 131  Q
    |||||| || ||| ||||| ||| |||||||||||||||||||||||||    
T  51894169 aaaacataacttttccatgatggaaaagctttaaggttacccatgtgaa 51894217  T

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Target: chr2 (Bit Score: 60; Significance: 1e-25; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 52 - 139
Target Start/End: Original strand, 17907338 - 17907425
Alignment:
Q  52 aaataacctgatcaactgccacatgtgggtaaaaacacaattttcccatggtgggaaagctttaaggttacccatgtgaacacacacc 139  Q
    |||||| |||||||||||||||||||||||||||||| ||||||||||| |||| ||| |||||||||||| ||||| ||||||||||    
T  17907338 aaataatctgatcaactgccacatgtgggtaaaaacataattttcccatagtggaaaaactttaaggttactcatgtaaacacacacc 17907425  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 17906814 - 17906851
Alignment:
Q  1 aatgttaaatttaactaacaaaagaaaattagacgtac 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  17906814 aatgttaaatttaactaacaaaagaaaattagacgtac 17906851  T

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Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 83 - 131
Target Start/End: Complemental strand, 17906403 - 17906355
Alignment:
Q  83 aaaacacaattttcccatggtgggaaagctttaaggttacccatgtgaa 131  Q
    ||||||||| |||||||||  ||||||||||||||||||||||||||||    
T  17906403 aaaacacaactttcccatgaagggaaagctttaaggttacccatgtgaa 17906355  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 138 - 177
Target Start/End: Complemental strand, 26577278 - 26577239
Alignment:
Q  138 ccaattttggtttgtgtttaggcggttgtagacaagagga 177  Q
    |||||||||||||||||||||||||||| |||||||||||    
T  26577278 ccaattttggtttgtgtttaggcggttgcagacaagagga 26577239  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 88 - 141
Target Start/End: Original strand, 43368870 - 43368923
Alignment:
Q  88 acaattttcccatggtgggaaagctttaaggttacccatgtgaacacacaccaa 141  Q
    |||| ||||||||||||||||||  ||||  || ||||||||||||||||||||    
T  43368870 acaactttcccatggtgggaaagaattaacctttcccatgtgaacacacaccaa 43368923  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 200 - 240
Target Start/End: Complemental strand, 26555524 - 26555484
Alignment:
Q  200 ggagtgcaacttgtttggtagaattttgcatctcgttcatc 240  Q
    ||||||| ||||||||||||||||||  |||||||||||||    
T  26555524 ggagtgcgacttgtttggtagaatttgacatctcgttcatc 26555484  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 93 - 139
Target Start/End: Original strand, 47814675 - 47814721
Alignment:
Q  93 tttcccatggtgggaaagctttaaggttacccatgtgaacacacacc 139  Q
    ||||||||||||||||||  ||||| || ||||||||||||||||||    
T  47814675 tttcccatggtgggaaaggattaagctttcccatgtgaacacacacc 47814721  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 89 - 139
Target Start/End: Complemental strand, 55281885 - 55281835
Alignment:
Q  89 caattttcccatggtgggaaagctttaaggttacccatgtgaacacacacc 139  Q
    ||||||||||||||||||||||  ||||  || ||||||||||||||||||    
T  55281885 caattttcccatggtgggaaaggattaacctttcccatgtgaacacacacc 55281835  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 90 - 139
Target Start/End: Original strand, 44868655 - 44868704
Alignment:
Q  90 aattttcccatggtgggaaagctttaaggttacccatgtgaacacacacc 139  Q
    |||||||||||||||||||||  ||||  || ||||||||||||||||||    
T  44868655 aattttcccatggtgggaaaggattaacctttcccatgtgaacacacacc 44868704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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