View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0768_high_38 (Length: 250)
Name: NF0768_high_38
Description: NF0768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0768_high_38 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 172; Significance: 2e-92; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 29 - 250
Target Start/End: Original strand, 46842026 - 46842250
Alignment:
| Q |
29 |
atttcatagtacctacacttcaaataaagttcataagataaaaagtaagaagnnnnnnnnn---gaattttgatgaggtctttagattcataaagcctag |
125 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
46842026 |
atttcatagtacctacacttcaaataaagttcataagataaaaagtaagaaagaaaaaaaaaaagaattttgatgaggtctttagattcataaagcctag |
46842125 |
T |
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| Q |
126 |
cataatatattaaagatggataacgatatacttaatctcttacaactaatttaaagtctcgtgagtggcttaggtagtaatgtatgatgtgagcatgcta |
225 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46842126 |
cataatatattaaagatggataacgatatacttaatctcttgcaactaatttaaagtctcgtgagtggcttaggtagtaatgtatgatgtgagcatgcta |
46842225 |
T |
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| Q |
226 |
tgatattatactactcccataataa |
250 |
Q |
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||||| ||||||||||||||||||| |
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| T |
46842226 |
tgatactatactactcccataataa |
46842250 |
T |
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