View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0768_high_5 (Length: 533)
Name: NF0768_high_5
Description: NF0768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0768_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 341; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 70 - 447
Target Start/End: Original strand, 28693359 - 28693732
Alignment:
| Q |
70 |
tactatgagactactttaatttctttcatgccaaacatgtacaacatttttattttgacatatgcctatttgttgatcactttggaacgcctcaatgatt |
169 |
Q |
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| T |
28693359 |
tactctgagactactttaatttctttcatgccaaacatgtacaacatttttattttgacatatgcctatttgttgatcactttggaacgcctcaatgatt |
28693458 |
T |
|
| Q |
170 |
agagggttcatgcggttcacataaactaacttgatcttgtattaacaagtggggtgtaccttctaatcgagtaggaggtgtggtcttcacactgatgaat |
269 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28693459 |
agagggttcatgcggttcacataaactaacttgatcttgtattaacaagtggggtgtaccttctaatcgagtaggaggtgtggtcttcacactgatgaac |
28693558 |
T |
|
| Q |
270 |
agattcacttcgactagtcatatgctccttctccaaacaggggaaccagggtatgcttgtccaaataagtaaggtgctggtagatcgatatcaatacaag |
369 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28693559 |
agattcactgcgactagtcatatgctccttctccaaacagggg----agggtatgcttgtccaaataagtaaggtgctggtagatcgatatcaatacaag |
28693654 |
T |
|
| Q |
370 |
taaaagtgggatgagtaatatatgtgtgatcatacatgtaaggagacactctatttatagtgatgtatctgatgatgt |
447 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| |
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| T |
28693655 |
taaaagtgggatgagtaatatatgtgtgatcatacatgcaaggagacactttatttatagtgatgtatctgatgatgt |
28693732 |
T |
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