View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0768_high_6 (Length: 504)
Name: NF0768_high_6
Description: NF0768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0768_high_6 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 163; Significance: 8e-87; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 163; E-Value: 8e-87
Query Start/End: Original strand, 171 - 409
Target Start/End: Complemental strand, 28692737 - 28692489
Alignment:
| Q |
171 |
aggtacaaccattcacacttgaatgagagagagtttgagtgaacagtacaaacaaacaatcgtgggttaattttaacccaaaaagaatcaaacaactatt |
270 |
Q |
| |
|
|||||||||||||| |||||||||||||| |||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28692737 |
aggtacaaccattcgcacttgaatgagag----tttgagtgaatagtagaaacaaacaatcgtgggttaattttaacccaaaaagaatcaaacaactatt |
28692642 |
T |
|
| Q |
271 |
caatcttaatgtgtaacaaagtaacatcaaaatgataaattaa---------------ataggatgttgtggtaatttcttattgactaagaaatgtcga |
355 |
Q |
| |
|
|||||||||||||||||||| |||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28692641 |
caatcttaatgtgtaacaaa-taacatgaaaatgataaattaagagagaagtaattaaataggatgttgtggtaatttcttattgactaagaaatgtcga |
28692543 |
T |
|
| Q |
356 |
actagctgaagagcttgtttgggagcaaaagtaggaacttgatgaccagcacct |
409 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28692542 |
actagctgaagagcttgtttgggagcaaaagtaggaacttgatgaccagcacct |
28692489 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 19 - 158
Target Start/End: Complemental strand, 28692952 - 28692806
Alignment:
| Q |
19 |
taaatttaatggctataaaaatggttcttagatatt-------caaaggtatcaatgaaaatgagaaaaaagttatttcaaaatgttgataattttttcg |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28692952 |
taaatttaatggctataaaaatggttcttagatattagatattcaaaggtatcaatgaaaatgagaaaaaagttatttcaaaatgttgataattttttcg |
28692853 |
T |
|
| Q |
112 |
attacatgaaagctttaatgtaaaaatactattcttttcttccattc |
158 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||| | |||||| |
|
|
| T |
28692852 |
attacatgaaagctttaatgtaaaaatactatttttttttcccattc |
28692806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 4569 times since January 2019
Visitors: 4836