View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0768_high_9 (Length: 456)
Name: NF0768_high_9
Description: NF0768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0768_high_9 |
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Alignment Details
Target: chr1 (Bit Score: 306; Significance: 1e-172; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 5 - 383
Target Start/End: Complemental strand, 36670607 - 36670227
Alignment:
| Q |
5 |
gaggagcagagacagtaccaaatgtagttctcatctatgtacttggacctgaaggtgaagctgacccaaaatattcttttccacactgcaataatatgga |
104 |
Q |
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| T |
36670607 |
gaggaacacagacagtaccagatgtagttctcatctatgtacttggacctgaaggtgaagctgacccaaaatattcttttccacactgcaataatatgga |
36670508 |
T |
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| Q |
105 |
cttgagaaaacatttctttattatttggtttgtgattgtatataatgctaacattcgagttattcgtttgtatttttcacatgtatatctagagtaagaa |
204 |
Q |
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| T |
36670507 |
cttgagaaaacatttttttattatttggtttgtgattgtatataatgctaacattcgagttattcgtttgtatttttcacatgtatatctagagtaagaa |
36670408 |
T |
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| Q |
205 |
aaa---taacagattaagatactaaagcatactataggaagatatggagcttttgtattagtggtcaggtacacaaactgatnnnnnnnggaatatatgt |
301 |
Q |
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| T |
36670407 |
aaatactaacagattaagatactaaagcatactataggaagatatggtgcttttgtattagtggtcaggtacacaaactgat-aaaaaagcaatatgtgt |
36670309 |
T |
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| Q |
302 |
ttcaaattgcatttataaactaataattttatgtattacttctcttgaacaggaaggtagaacatgagtacatttttaaact |
383 |
Q |
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| T |
36670308 |
ttcaaattgcatttataaactaataattttatgtattacttctcttgaacaggaaggtagaatatgtgtacatttttaaact |
36670227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 379 - 428
Target Start/End: Complemental strand, 36670201 - 36670152
Alignment:
| Q |
379 |
aaactgttcagtcagccttttatatgcagcttgcaaattgatttatgttt |
428 |
Q |
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| T |
36670201 |
aaactgttcagtcagccttttatatgcagcttgcaaattgatttatgttt |
36670152 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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