View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0768_low_1 (Length: 954)
Name: NF0768_low_1
Description: NF0768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0768_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 654; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 654; E-Value: 0
Query Start/End: Original strand, 24 - 857
Target Start/End: Complemental strand, 5273779 - 5272959
Alignment:
| Q |
24 |
tgagatgaatgaggaaagtgtatggaattgtaacagttctactttgtgtctgtcactgagggaattaaggaaacctggtttgagttttgaaaaggcattg |
123 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5273779 |
tgagatgaatgaggaaagtgtgtggaattgtaacagttctactttgtgtctgtcactgagggaattaaggaaacctggtttgagttttgaaaaggcattg |
5273680 |
T |
|
| Q |
124 |
tcttctggtgcaaaaagggttaagccaccactgctagaatcnnnnnnnnnnnnnnnnnnnntaactagttgtgagttgagttggtttattaactgagttg |
223 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
5273679 |
tcttctggtgcaaaaagggttaagccaccactgctagaatctgatgatgatgatg------taactagttgtgagttgagttggtttattaactgagttg |
5273586 |
T |
|
| Q |
224 |
ttttgagaagacgaatgagaactgagaatcnnnnnnnnnnnnngaggatttggataatgtctatggatggtgattttgggagaatatttggggtgggggc |
323 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
5273585 |
ttttgagaagacgaatgagaactgagaatctttttgcttttttgaggatttggataatgtctatggatggtgattttgggagaatattaggggtgggggc |
5273486 |
T |
|
| Q |
324 |
cccactcggggttactggtacaagggggactgtgttgaaacctggtgctggtgtagaggcttgtggagattgaactggtgagatttgtgctgaggtggta |
423 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5273485 |
cccactcggggttactggtacaagggggactgtgttgaaacctggtgctggtgtagaggcttgtggagattgaactggtgagatttgtgctgaggtggta |
5273386 |
T |
|
| Q |
424 |
gtggaatagtagagggtgagaattagtagctgtagaattgaggcaaagaaaagagatcgtagtttcatcattgtagtaagtaattgttttaaagagtttt |
523 |
Q |
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| T |
5273385 |
gtggaatagtagagggtgagaattagtagctgtagaattgaggcaaagaaaagagatcgtagtttcatcattgtagtaagtaattg-tttaaagagtttt |
5273287 |
T |
|
| Q |
524 |
gaatgttgattagtgtttaggacacttgagattactacttgattgatatttgatagtactttatttgtgtccttatgtgaggaatgagggagaagggatt |
623 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5273286 |
gaatgttgattagtgtttaggacacttgagattactacttga-------ttgatagtactttatttgtgtccttatgtgaggaatgagggagaagggatt |
5273194 |
T |
|
| Q |
624 |
ggcttttattgaggatgctcattggtgaaaggtttcgtttagttggaaagaaaatgtgatgttacaacatttttcatatcaaataggtagcaaacactac |
723 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5273193 |
ggcttttattgaggatgctcattggtgaaaggtttcgtttagttggaaagaaaatgtgatgttacaacatttttcatatcaaataggtagcaaacactac |
5273094 |
T |
|
| Q |
724 |
ctgtcagggacatagaaaggtaaactaggctagtgcattatatgataattctgattaattag-nnnnnnnnnaggaaaaatttgattaattagttgtgag |
822 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
5273093 |
ctgtcagggacatagaaaggtaaactaggctagtgcattatatgataattctgattaattagtttttcttttaggaaaaatttgattaattagttgtgag |
5272994 |
T |
|
| Q |
823 |
acagaagatttgacactgacaataatattattatt |
857 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |
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| T |
5272993 |
acagaagatttgacactgacaataatattattatt |
5272959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 576 - 677
Target Start/End: Complemental strand, 5268833 - 5268732
Alignment:
| Q |
576 |
atagtactttatttgtgtccttatgtgaggaatgagggagaagggattggcttttattgaggatgctcattggtgaaaggtttcgtttagttggaaagaa |
675 |
Q |
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||||||||| | | |||||||| ||||||||||||||||||| |||||| ||||||||||||||||| |||| || ||||||| |||||| | ||||||| |
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| T |
5268833 |
atagtacttaactggtgtccttttgtgaggaatgagggagaatggattgccttttattgaggatgctaattgatgcaaggtttagtttaggtagaaagaa |
5268734 |
T |
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| Q |
676 |
aa |
677 |
Q |
| |
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|| |
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|
| T |
5268733 |
aa |
5268732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000006; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 52 - 152
Target Start/End: Complemental strand, 36151243 - 36151143
Alignment:
| Q |
52 |
tgtaacagttctactttgtgtctgtcactgagggaattaaggaaacctggtttgagttttgaaaaggcattgtcttctggtgcaaaaagggttaagccac |
151 |
Q |
| |
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||||| ||||| ||||| ||||| ||| ||||||| || ||||| |||| ||||||||| || || ||| |||||||||||||||| |||||| |||| |
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| T |
36151243 |
tgtaagagttcgactttttgtctatcagtgagggagttgaggaaccctgctttgagtttggagaatgcagaatcttctggtgcaaaaatggttaacccac |
36151144 |
T |
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| Q |
152 |
c |
152 |
Q |
| |
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| T |
36151143 |
c |
36151143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 52 - 146
Target Start/End: Complemental strand, 36154629 - 36154535
Alignment:
| Q |
52 |
tgtaacagttctactttgtgtctgtcactgagggaattaaggaaacctggtttgagttttgaaaaggcattgtcttctggtgcaaaaagggttaa |
146 |
Q |
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||||| ||||| ||||| ||||| ||| ||||||| || ||||| |||| ||||||||| || || ||| |||||||||||||||| |||||| |
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| T |
36154629 |
tgtaagagttcgactttttgtctatcagtgagggagttgaggaaccctgctttgagtttggagaatgcagaatcttctggtgcaaaaatggttaa |
36154535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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