View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0768_low_11 (Length: 463)
Name: NF0768_low_11
Description: NF0768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0768_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 178; Significance: 8e-96; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 178; E-Value: 8e-96
Query Start/End: Original strand, 21 - 210
Target Start/End: Original strand, 3415244 - 3415433
Alignment:
| Q |
21 |
acatcatcaaagtctacattatcaatcaaatttatgaagtaatcaaatttttaaaattgtgaatgatagttacttgtatatatgacattttaatattgga |
120 |
Q |
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| T |
3415244 |
acatcatcaaagtctacattatcaatcaaatttatgaagtaatcaaatttttaaaatcgtgaatgataattacttgtatatatgacattttaatattgga |
3415343 |
T |
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| Q |
121 |
ataataaattgtaagattagttgcatacctctccatggttcacagtgatcaaatgtgcagagaaatcagtgccattatctcctgagaaga |
210 |
Q |
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| T |
3415344 |
ataataaattataagattagttgcatacctctccatggttcacagtgatcaaatgtgcagagaaatcagtgccattatctcctgagaaga |
3415433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 138; E-Value: 6e-72
Query Start/End: Original strand, 277 - 430
Target Start/End: Original strand, 3415499 - 3415652
Alignment:
| Q |
277 |
aacataccaagcacttcaacttgctgattcttcttcatagtggaagaaggagaaataatggcagcattttgggtagggaccgaggttgaaccccaagtaa |
376 |
Q |
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| T |
3415499 |
aacataccaagcacttcaacttgctgattcttcttcatagtggaagaaggagaaataatggcagcattttgggttgggaccgagcttgaacccaaagtaa |
3415598 |
T |
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| Q |
377 |
tgttgccatcaaggaagtacttcctcggtcggcccctctttttcttgattgaac |
430 |
Q |
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| T |
3415599 |
tgttgccattaaggaagtacttcctcggtcggcccctctttttcttgattgaac |
3415652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 318 - 434
Target Start/End: Original strand, 3415663 - 3415779
Alignment:
| Q |
318 |
ggaagaaggagaaataatggcagcattttgggtagggaccgaggttgaaccccaagtaatgttgccatcaaggaagtacttcctcggtcggcccctcttt |
417 |
Q |
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| T |
3415663 |
ggaagaaggagaaataatggcagcattttgggtggggaccgagcttgagcccaaagtaatgtttccatcaggaaagtacttcctcggccggcccctcttt |
3415762 |
T |
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| Q |
418 |
ttcttgattgaactaga |
434 |
Q |
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| T |
3415763 |
ttcttgaatgaactaga |
3415779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 371 - 435
Target Start/End: Complemental strand, 4242517 - 4242453
Alignment:
| Q |
371 |
aagtaatgttgccatcaaggaagtacttcctcggtcggcccctctttttcttgattgaactagat |
435 |
Q |
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| T |
4242517 |
aagtaatgttgtcatcaaggaagtatttcctcggtcggcccctctttttcttgattgaaccagat |
4242453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 371 - 430
Target Start/End: Complemental strand, 4249667 - 4249608
Alignment:
| Q |
371 |
aagtaatgttgccatcaaggaagtacttcctcggtcggcccctctttttcttgattgaac |
430 |
Q |
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| T |
4249667 |
aagtaatgtcgtgatcaaggaagtatttcctcggtcgacctctctttttcttgatcgaac |
4249608 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 144 - 197
Target Start/End: Complemental strand, 4812037 - 4811984
Alignment:
| Q |
144 |
catacctctccatggttcacagtgatcaaatgtgcagagaaatcagtgccatta |
197 |
Q |
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| T |
4812037 |
catacctctccacggttcacaatgatcacatgtggagagaaaccagagccatta |
4811984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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