View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0768_low_15 (Length: 452)
Name: NF0768_low_15
Description: NF0768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0768_low_15 |
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Alignment Details
Target: chr3 (Bit Score: 110; Significance: 3e-55; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 287 - 424
Target Start/End: Original strand, 44802962 - 44803099
Alignment:
| Q |
287 |
acattatattgtaacaaattatacatatctttttaattactccaataatataactaatatgatatagattcttttgctaaaaaagaaattatatagattc |
386 |
Q |
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| T |
44802962 |
acattatattgtaataaattatacatatctttttaattactccaataatataactaatatgatatagattcttttgctaaaaaagaaattatatagattc |
44803061 |
T |
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| Q |
387 |
ttatcannnnnnnncttggggtgaaaaccttgatatat |
424 |
Q |
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| T |
44803062 |
ttatcattttttttcttggggtgaaaaccttgatatat |
44803099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 44802676 - 44802778
Alignment:
| Q |
1 |
ttgccttcaatcaaagaaccaaatcaatcaaattcaacatcaattactccgggtatcgattccatgttattcaaaatcgatcacctggagtctgaatcaa |
100 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| | |||||||||||||| |
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| T |
44802676 |
ttgccttcaatcaaagaaccaaattaatcaaattcaacatcaattagtccgggtatcgattccatgttattcaaaatcgatcatccggagtctgaatcaa |
44802775 |
T |
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| Q |
101 |
acc |
103 |
Q |
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||| |
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| T |
44802776 |
acc |
44802778 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 146 - 222
Target Start/End: Original strand, 44802821 - 44802897
Alignment:
| Q |
146 |
actagtgttcagacggacacatatccgtcagttcactctttttcttacgctaatatgtataaattatgaataatagg |
222 |
Q |
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| T |
44802821 |
actagtgttcagacggacacatatccgtctgttcactctttttcttacgctaatgtgtataaattatgaataatagg |
44802897 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 176 - 221
Target Start/End: Original strand, 19112757 - 19112802
Alignment:
| Q |
176 |
gttcactctttttcttacgctaatatgtataaattatgaataatag |
221 |
Q |
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| T |
19112757 |
gttccctctttttattgcgctaatatgtataaattatgaataatag |
19112802 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 290 - 361
Target Start/End: Complemental strand, 24916135 - 24916063
Alignment:
| Q |
290 |
ttatattgtaacaaattatacatatcttttt-aattactccaataatataactaatatgatatagattctttt |
361 |
Q |
| |
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||||||||||||||||||||| ||||||||| ||| || |||||||||||| ||||| ||||| ||||||| |
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|
| T |
24916135 |
ttatattgtaacaaattatacttatctttttcaataacaacaataatataacaaatataatataatttctttt |
24916063 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 298 - 352
Target Start/End: Original strand, 4353017 - 4353072
Alignment:
| Q |
298 |
taacaaattatacatatcttttt-aattactccaataatataactaatatgatata |
352 |
Q |
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||||||||||||| ||||||||| |||||| ||||||||||||| ||||| ||||| |
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| T |
4353017 |
taacaaattatacttatctttttcaattacaccaataatataacaaatataatata |
4353072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 182 - 220
Target Start/End: Complemental strand, 7776793 - 7776755
Alignment:
| Q |
182 |
tctttttcttacgctaatatgtataaattatgaataata |
220 |
Q |
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||||||| |||||||||| |||||||||||||||||||| |
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| T |
7776793 |
tctttttattacgctaatgtgtataaattatgaataata |
7776755 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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