View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0768_low_17 (Length: 431)
Name: NF0768_low_17
Description: NF0768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0768_low_17 |
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Alignment Details
Target: chr1 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 169 - 363
Target Start/End: Original strand, 37514445 - 37514639
Alignment:
| Q |
169 |
ggtgaaagatgagtgaagtagtaccaagttggtttggaagaagatctgggagtgagagaagaaggttgttcaggaatggagagagtgggggtgcgaaatg |
268 |
Q |
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| T |
37514445 |
ggtgaaagatgagtgaagtagtaccaagttggtttggaagaagatctgggagtgagagaagaaggttgttcaggaatggagagaatgggggtgtgaaatg |
37514544 |
T |
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| Q |
269 |
taataattgatattgtagacagtaaatatgagtcaaaggaaaataatggcgcgtgggttaagagtaagagaagtgagcaggatcacgtgatgatg |
363 |
Q |
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| T |
37514545 |
taataattgatattgtagacagtaaatatgagtcaaaggaaaataatggcgcgtgggttaagagtaagagaagtgagcaggatcacgtgatgatg |
37514639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 11 - 87
Target Start/End: Original strand, 37514289 - 37514365
Alignment:
| Q |
11 |
cagagaggaataaataaagcaaaaacaagaataaactataaagnnnnnnncttttcaaagtataatcaacactagta |
87 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
37514289 |
cagaaaggaataaataaagcaaaaacaagaataaactataaagaaaaaaacttttcaaagtataatcaacactagta |
37514365 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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