View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0768_low_2 (Length: 697)
Name: NF0768_low_2
Description: NF0768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0768_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 16 - 273
Target Start/End: Original strand, 8337989 - 8338247
Alignment:
| Q |
16 |
atgtgtattgatatattttcccaccaaatagttgtcaataaagttcagttgttgtaaccagttaaagttagatatatcagtgttaagtttgaactaatgg |
115 |
Q |
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| T |
8337989 |
atgtgtattgatatattttcccaccaaatagttgtcaataaagttcagttgttgtaaccagttaaagttagatatatcagtgttaagtttgaactaatgg |
8338088 |
T |
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| Q |
116 |
taactaataaagttacattacacaattggtccaaactaatggtaagttagtt-nnnnnnnnnttatttagacaacttttacccattaatgaaggacgtgg |
214 |
Q |
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| T |
8338089 |
taactaataaagttacattacacaattggtccaaactaatggtaagttagttaaaaaaaaaattatttagacaacttttatccattaatgaaggacgtgg |
8338188 |
T |
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| Q |
215 |
cagaaaaatagcttagggcataagtgggttttccacaggatcttcctttcttatattaa |
273 |
Q |
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| T |
8338189 |
cagaaaaagagcctagggcataagtgggttttccacaggatcttcctttcttatattaa |
8338247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 16 - 273
Target Start/End: Original strand, 10235269 - 10235528
Alignment:
| Q |
16 |
atgtgtattgatatattttcccaccaaatagttgtcaataaagttcagttgttgtaaccagttaaagttagatatatcagtgttaagtttgaactaatgg |
115 |
Q |
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| T |
10235269 |
atgtgtattgatatattttcccaccaaatagttgtcaataaagttcagttgttgtaaccaattaaagttagatatat-agtgttaagtttgaactaatgg |
10235367 |
T |
|
| Q |
116 |
taactaataaagttacattacacaattggtccaaactaatggtaagttagtt---nnnnnnnnnttatttagacaacttttacccattaatgaaggacgt |
212 |
Q |
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| T |
10235368 |
taactaataaagttacattacacaattggtccaaactaatggtaagttagttaaaaaaaaaaaaaaatttagacaacttttacccattaatgaaggacgt |
10235467 |
T |
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| Q |
213 |
ggcagaaaaatagcttagggcataagtgggttttccacaggatcttcctttcttatattaa |
273 |
Q |
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| T |
10235468 |
ggcagaaaaagagcttagggcataagtgggttttccacatgatcttcctttcttatattaa |
10235528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 131; Significance: 1e-67; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 498 - 668
Target Start/End: Original strand, 24813425 - 24813595
Alignment:
| Q |
498 |
cagtcaaaaaacatggagcttggtaactgcggtcacataaagaaatgatgtaaacacaattttctttttcataaaccacgttctagacaagtacatgttt |
597 |
Q |
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|||||||||||||||||||||| ||||| ||||||||||||||| || |||||||||||||||||||||||||||||||||| |||||||||| ||| || |
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| T |
24813425 |
cagtcaaaaaacatggagcttgttaactacggtcacataaagaagtgctgtaaacacaattttctttttcataaaccacgttttagacaagtaaatgatt |
24813524 |
T |
|
| Q |
598 |
tgttttggtaaaagaaaacttaatacattttattaatgatcaaatgatacatgaataatttaccaaaaaat |
668 |
Q |
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| T |
24813525 |
tgttttggtaaaagaaaacttaatacattttattaataatcaaatgatactggaataatttaccaaaaaat |
24813595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 279 - 398
Target Start/End: Original strand, 24815733 - 24815852
Alignment:
| Q |
279 |
atgtcgaattggagtaaattttgatgaataatgatatacgtacgagtattgaaaaaatgtagcagtagttttgagttgactgacattctggagacaatca |
378 |
Q |
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|||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| |||||| |||||| |
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| T |
24815733 |
atgtcgaattggagtaaattttgaagaataatgatatatgtacgagtattgaaaaaatgtagtagtagttttgagttgactgacatgctggaggcaatca |
24815832 |
T |
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| Q |
379 |
cacggggtcctaacatggtc |
398 |
Q |
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|||||||||||||||||||| |
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| T |
24815833 |
cacggggtcctaacatggtc |
24815852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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