View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0768_low_23 (Length: 378)
Name: NF0768_low_23
Description: NF0768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0768_low_23 |
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Alignment Details
Target: chr7 (Bit Score: 303; Significance: 1e-170; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 21 - 372
Target Start/End: Original strand, 33517578 - 33517931
Alignment:
| Q |
21 |
acatcatcaaattcggagaaacaaaatttaataatgatttacattgttgttattaaagtgtcctacttaaaatagtttctttgaacactgaatgcagagg |
120 |
Q |
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| T |
33517578 |
acatcattaaattcggagaaacaaaatttaataatgattaacattgttgttattaaagtgtcctacttaaaatagtttctttgaacactgaatgcagagg |
33517677 |
T |
|
| Q |
121 |
gctcaccaaaaaatttgccgaactaatttctgtattactctatatttggcctgtaaattattcatcatgattgaactatcccgaaatatgaatcagttct |
220 |
Q |
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| T |
33517678 |
gctcaccaaaaaatttgccgaactaatttctgtattactctatatttggcctgtaaattattcatcatgattgaactatcccgaaatatgaatcagttct |
33517777 |
T |
|
| Q |
221 |
ttgaaatcatattattggttttatacccaatatttatcaatggtttttgcaa--nnnnnnnnaaacaattcctagaaaaaataggcttcagaaaataatt |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
33517778 |
ttgaaatcatattattggttttatacccaatatttatcaatggtttttgcaatttgttttttaaacaattcctagaaaaaataggcttcagaaaataatt |
33517877 |
T |
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| Q |
319 |
cttgagcattctaatttaatgttggatcacttggatggttttgatattattgga |
372 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||| ||||| |
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| T |
33517878 |
cttgagcattctactttaatgttggatcacttggatggttttgatattcttgga |
33517931 |
T |
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