View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0768_low_26 (Length: 361)

Name: NF0768_low_26
Description: NF0768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0768_low_26
NF0768_low_26
[»] chr5 (3 HSPs)
chr5 (93-351)||(41722654-41722912)
chr5 (117-347)||(34359437-34359667)
chr5 (93-125)||(41718154-41718186)
[»] chr4 (4 HSPs)
chr4 (118-351)||(48697661-48697894)
chr4 (118-351)||(30946023-30946256)
chr4 (108-351)||(42270147-42270390)
chr4 (211-344)||(2003134-2003267)
[»] chr8 (3 HSPs)
chr8 (108-351)||(9439921-9440164)
chr8 (211-351)||(24594424-24594564)
chr8 (115-152)||(24594367-24594404)
[»] chr3 (4 HSPs)
chr3 (108-351)||(54545389-54545632)
chr3 (105-351)||(5819102-5819348)
chr3 (211-351)||(42589192-42589332)
chr3 (115-152)||(42589352-42589389)
[»] chr6 (8 HSPs)
chr6 (105-351)||(26976720-26976966)
chr6 (108-351)||(27874539-27874782)
chr6 (120-351)||(18967312-18967543)
chr6 (117-233)||(21966493-21966604)
chr6 (211-344)||(1472398-1472531)
chr6 (117-177)||(30968569-30968629)
chr6 (251-348)||(21965628-21965725)
chr6 (115-152)||(1472341-1472378)
[»] chr2 (3 HSPs)
chr2 (116-351)||(829723-829958)
chr2 (116-351)||(28715317-28715550)
chr2 (115-344)||(13840763-13840995)
[»] scaffold0074 (1 HSPs)
scaffold0074 (120-351)||(27877-28108)
[»] chr7 (5 HSPs)
chr7 (120-339)||(2323956-2324175)
chr7 (211-344)||(7504696-7504829)
chr7 (113-314)||(22510198-22510398)
chr7 (212-341)||(37957033-37957162)
chr7 (115-152)||(7504639-7504676)
[»] chr1 (2 HSPs)
chr1 (250-350)||(34973726-34973826)
chr1 (118-219)||(41413422-41413523)


Alignment Details
Target: chr5 (Bit Score: 255; Significance: 1e-142; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 93 - 351
Target Start/End: Complemental strand, 41722912 - 41722654
Alignment:
Q  93 actttatggcttatgtgttcacacatgttcacaatctcccacttaaagtcacttttgtgagcttccaaaatctctctaccttgccaactccagttgctac 192  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41722912 actttatggcttatgtgttcacacatgttcacaatctcccacttaaagtcacttttgtgagcttccaaaatctctctaccttgccaactccagttgctac 41722813  T
Q  193 gtttccaataggccatacgaggatcgacaccatacaaacttatcagtgttgatcggctttgtcattacatctgctagattatcattggtgtgaatcttct 292  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41722812 gtttccaataggccatacgaggatcgacaccatacaaacttatcagcgttgatcggctttgtcattacatctgctagattatcattggtgtgaatcttct 41722713  T
Q  293 gcatgtccacacttccctcctctactacttcgcgaacaaaatgatattgaacgcctatg 351  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41722712 gcatgtccacacttccctcctctactacttcgcgaacaaaatgatattgaacgcctatg 41722654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 117 - 347
Target Start/End: Complemental strand, 34359667 - 34359437
Alignment:
Q  117 atgttcacaatctcccacttaaagtcacttttgtgagcttccaaaatctctctaccttgccaactccagttgctacgtttccaataggccatacgaggat 216  Q
    |||||||||||||||||||||||||||||||||||||| | |||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34359667 atgttcacaatctcccacttaaagtcacttttgtgagcattcaaagtatctctaccttgccaactccagttgctacgtttccaataggccatacgaggat 34359568  T
Q  217 cgacaccatacaaacttatcagtgttgatcggctttgtcattacatctgctagattatcattggtgtgaatcttctgcatgtccacacttccctcctcta 316  Q
    |||||||||| |||||| |||| |||||||||||||||||||||||| ||||| |||||||||||||||||||| ||||| ||||| ||||||||||| |    
T  34359567 cgacaccatataaacttgtcagcgttgatcggctttgtcattacatccgctaggttatcattggtgtgaatcttttgcatatccacgcttccctcctcca 34359468  T
Q  317 ctacttcgcgaacaaaatgatattgaacgcc 347  Q
    ||||||| |||||||||||||||||||||||    
T  34359467 ctacttctcgaacaaaatgatattgaacgcc 34359437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 93 - 125
Target Start/End: Complemental strand, 41718186 - 41718154
Alignment:
Q  93 actttatggcttatgtgttcacacatgttcaca 125  Q
    |||||||||||||||||||||||||||||||||    
T  41718186 actttatggcttatgtgttcacacatgttcaca 41718154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 210; Significance: 1e-115; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 118 - 351
Target Start/End: Original strand, 48697661 - 48697894
Alignment:
Q  118 tgttcacaatctcccacttaaagtcacttttgtgagcttccaaaatctctctaccttgccaactccagttgctacgtttccaataggccatacgaggatc 217  Q
    ||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||| ||| | |||||||||||||||||||||||||||||||||    
T  48697661 tgttcacaatctcccacttaaagtcacttttgtgagctctcaaaatctctctaccttgccgacttcggttgctacgtttccaataggccatacgaggatc 48697760  T
Q  218 gacaccatacaaacttatcagtgttgatcggctttgtcattacatctgctagattatcattggtgtgaatcttctgcatgtccacacttccctcctctac 317  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48697761 gacaccatacaaacttatcagcgttgatcggctttgtcattacatctgctagattatcattggtgtgaatcttctgcatgtccacacttccctcctctac 48697860  T
Q  318 tacttcgcgaacaaaatgatattgaacgcctatg 351  Q
    ||||||||||||||||||||||||||||||||||    
T  48697861 tacttcgcgaacaaaatgatattgaacgcctatg 48697894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 118 - 351
Target Start/End: Original strand, 30946023 - 30946256
Alignment:
Q  118 tgttcacaatctcccacttaaagtcacttttgtgagcttccaaaatctctctaccttgccaactccagttgctacgtttccaataggccatacgaggatc 217  Q
    |||||||| |||||||||||||||||||||||||||||  ||||||||||||||||| || ||| | |||||||||||||||||||||||||||||||||    
T  30946023 tgttcacagtctcccacttaaagtcacttttgtgagctctcaaaatctctctaccttaccgacttcggttgctacgtttccaataggccatacgaggatc 30946122  T
Q  218 gacaccatacaaacttatcagtgttgatcggctttgtcattacatctgctagattatcattggtgtgaatcttctgcatgtccacacttccctcctctac 317  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30946123 gacaccatacaaacttatcagcgttgatcggctttgtcattacatctgctagattatcattggtgtgaatcttctgcatgtccacacttccctcctctac 30946222  T
Q  318 tacttcgcgaacaaaatgatattgaacgcctatg 351  Q
    ||||||||||||||||||||||||||||||||||    
T  30946223 tacttcgcgaacaaaatgatattgaacgcctatg 30946256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 108 - 351
Target Start/End: Complemental strand, 42270390 - 42270147
Alignment:
Q  108 tgttcacacatgttcacaatctcccacttaaagtcacttttgtgagcttccaaaatctctctaccttgccaactccagttgctacgtttccaataggcca 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||  | |||| |||||||||||||||||||| ||||||||||||||||||||||||    
T  42270390 tgttcacacatgttcacaatctcccacttaaagtcacttttgtgagtattcaaagtctctctaccttgccaactctagttgctacgtttccaataggcca 42270291  T
Q  208 tacgaggatcgacaccatacaaacttatcagtgttgatcggctttgtcattacatctgctagattatcattggtgtgaatcttctgcatgtccacacttc 307  Q
    ||| | ||||||||||||| |||||| ||||||||||||| |||||||||| |||||||||| |||||||| ||||||||||||||||| ||||| ||||    
T  42270290 tacaaagatcgacaccatataaacttgtcagtgttgatcgactttgtcattgcatctgctaggttatcattagtgtgaatcttctgcatatccacgcttc 42270191  T
Q  308 cctcctctactacttcgcgaacaaaatgatattgaacgcctatg 351  Q
    | ||||||||||||||||||||||||||||||||||||||||||    
T  42270190 cttcctctactacttcgcgaacaaaatgatattgaacgcctatg 42270147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 211 - 344
Target Start/End: Complemental strand, 2003267 - 2003134
Alignment:
Q  211 gaggatcgacaccatacaaacttatcagtgttgatcggctttgtcattacatctgctagattatcattggtgtgaatcttctgcatgtccacacttccct 310  Q
    |||||||||||||||  ||| || |||   ||||| | ||||||||| |||||||||| ||| || ||||||||||| |||||||| || ||||| || |    
T  2003267 gaggatcgacaccatgtaaatttgtcaacattgattgactttgtcataacatctgctaaattgtctttggtgtgaattttctgcatatcaacactccctt 2003168  T
Q  311 cctctactacttcgcgaacaaaatgatattgaac 344  Q
     |||||| ||||| ||||||||||| ||||||||    
T  2003167 tctctaccacttctcgaacaaaatggtattgaac 2003134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 184; Significance: 2e-99; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 108 - 351
Target Start/End: Original strand, 9439921 - 9440164
Alignment:
Q  108 tgttcacacatgttcacaatctcccacttaaagtcacttttgtgagcttccaaaatctctctaccttgccaactccagttgctacgtttccaataggcca 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||  | |||| |||||||||||||||||||||||||||||||||||||||||||||    
T  9439921 tgttcacacatgttcacaatctcccacttaaagtcacttttgtgagtattcaaagtctctctaccttgccaactccagttgctacgtttccaataggcca 9440020  T
Q  208 tacgaggatcgacaccatacaaacttatcagtgttgatcggctttgtcattacatctgctagattatcattggtgtgaatcttctgcatgtccacacttc 307  Q
    ||||| ||||||||||||| |||||| ||||||||||||| |||||||||| |||||||||| |||||||| ||||||||||||||||| ||||| ||||    
T  9440021 tacgaagatcgacaccatataaacttgtcagtgttgatcgactttgtcattgcatctgctaggttatcattagtgtgaatcttctgcatatccacgcttc 9440120  T
Q  308 cctcctctactacttcgcgaacaaaatgatattgaacgcctatg 351  Q
    | |||||||||||||||||||||||||||||||||| |||||||    
T  9440121 cttcctctactacttcgcgaacaaaatgatattgaatgcctatg 9440164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 211 - 351
Target Start/End: Original strand, 24594424 - 24594564
Alignment:
Q  211 gaggatcgacaccatacaaacttatcagtgttgatcggctttgtcattacatctgctagattatcattggtgtgaatcttctgcatgtccacacttccct 310  Q
    ||||||| |||||||  ||| || ||||  ||||| | ||||||||| |||||||||| ||| || ||||||||||| |||||||| || ||||| || |    
T  24594424 gaggatctacaccatgtaaatttgtcagcattgattgactttgtcataacatctgctaaattgtctttggtgtgaattttctgcatatcaacactccctt 24594523  T
Q  311 cctctactacttcgcgaacaaaatgatattgaacgcctatg 351  Q
     |||||| ||||| ||||||||||| |||||||| ||||||    
T  24594524 tctctaccacttctcgaacaaaatggtattgaacacctatg 24594564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 115 - 152
Target Start/End: Original strand, 24594367 - 24594404
Alignment:
Q  115 acatgttcacaatctcccacttaaagtcacttttgtga 152  Q
    |||| |||||||||||||||||||||||||||||||||    
T  24594367 acatcttcacaatctcccacttaaagtcacttttgtga 24594404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 184; Significance: 2e-99; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 108 - 351
Target Start/End: Complemental strand, 54545632 - 54545389
Alignment:
Q  108 tgttcacacatgttcacaatctcccacttaaagtcacttttgtgagcttccaaaatctctctaccttgccaactccagttgctacgtttccaataggcca 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| | ||||  |||||||||||||||||| ||||||||| |||||||||||||||    
T  54545632 tgttcacacatgttcacaatctcccacttaaagtcacttttgtgagcattcaaagcctctctaccttgccaacttcagttgctatgtttccaataggcca 54545533  T
Q  208 tacgaggatcgacaccatacaaacttatcagtgttgatcggctttgtcattacatctgctagattatcattggtgtgaatcttctgcatgtccacacttc 307  Q
    ||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| ||||| ||||    
T  54545532 tacgaggatcgacaccatataaacttgtcagtgttgatcggctttgtcattacatctgctaggttatcattagtgtgaatcttctgcatatccacgcttc 54545433  T
Q  308 cctcctctactacttcgcgaacaaaatgatattgaacgcctatg 351  Q
    | |||||||||||||| |||| ||||||||||||||||||||||    
T  54545432 cttcctctactacttctcgaataaaatgatattgaacgcctatg 54545389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 105 - 351
Target Start/End: Original strand, 5819102 - 5819348
Alignment:
Q  105 atgtgttcacacatgttcacaatctcccacttaaagtcacttttgtgagcttccaaaatctctctaccttgccaactccagttgctacgtttccaatagg 204  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||| | |||| | ||||||| ||||||||| ||||||||||||||||||||||    
T  5819102 atgtgttcacacatgttcacaatctcccacttaaagttacttttgtgagcattcaaagtttctctactttgccaacttcagttgctacgtttccaatagg 5819201  T
Q  205 ccatacgaggatcgacaccatacaaacttatcagtgttgatcggctttgtcattacatctgctagattatcattggtgtgaatcttctgcatgtccacac 304  Q
    |||||||||||||||| ||||| |||||| ||||||||||||||||||||||||||| ||||||| |||||||| ||||||||||| ||||| ||||| |    
T  5819202 ccatacgaggatcgacgccatataaacttgtcagtgttgatcggctttgtcattacaactgctaggttatcattagtgtgaatcttttgcatatccacgc 5819301  T
Q  305 ttccctcctctactacttcgcgaacaaaatgatattgaacgcctatg 351  Q
    |||||||||| |||||||| |||||||||||||||||||||||||||    
T  5819302 ttccctcctccactacttctcgaacaaaatgatattgaacgcctatg 5819348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 211 - 351
Target Start/End: Complemental strand, 42589332 - 42589192
Alignment:
Q  211 gaggatcgacaccatacaaacttatcagtgttgatcggctttgtcattacatctgctagattatcattggtgtgaatcttctgcatgtccacacttccct 310  Q
    ||||||| |||||||  ||| || ||||  ||||| | ||||||||| | |||||||| ||| || ||||||||||| |||||||| || ||||| || |    
T  42589332 gaggatctacaccatgtaaatttgtcagcattgattgactttgtcataatatctgctaaattgtctttggtgtgaattttctgcatatcaacactccctt 42589233  T
Q  311 cctctactacttcgcgaacaaaatgatattgaacgcctatg 351  Q
     |||||| ||||| ||||||||||| |||||||| ||||||    
T  42589232 tctctaccacttctcgaacaaaatggtattgaacacctatg 42589192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 115 - 152
Target Start/End: Complemental strand, 42589389 - 42589352
Alignment:
Q  115 acatgttcacaatctcccacttaaagtcacttttgtga 152  Q
    |||| |||||||||||||||||||||||||||||||||    
T  42589389 acatcttcacaatctcccacttaaagtcacttttgtga 42589352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 183; Significance: 6e-99; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 183; E-Value: 6e-99
Query Start/End: Original strand, 105 - 351
Target Start/End: Original strand, 26976720 - 26976966
Alignment:
Q  105 atgtgttcacacatgttcacaatctcccacttaaagtcacttttgtgagcttccaaaatctctctaccttgccaactccagttgctacgtttccaatagg 204  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| | |||| | ||||||| ||||||||| ||||||||||||||||||||||    
T  26976720 atgtgttcacacatgttcacaatctcccacttaaagtcacttttgtgagcattcaaagtttctctactttgccaacttcagttgctacgtttccaatagg 26976819  T
Q  205 ccatacgaggatcgacaccatacaaacttatcagtgttgatcggctttgtcattacatctgctagattatcattggtgtgaatcttctgcatgtccacac 304  Q
    |||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| ||||| ||||| |    
T  26976820 ccatacgaggatcgacaccatataaacttgtcagtgttgatcggctttgtcattacatctgctaggttatcattagtgtgaatcttttgcatatccacgc 26976919  T
Q  305 ttccctcctctactacttcgcgaacaaaatgatattgaacgcctatg 351  Q
    |||||||||| |||||||| |||||||||||||||||||| ||||||    
T  26976920 ttccctcctccactacttctcgaacaaaatgatattgaacacctatg 26976966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 176; E-Value: 9e-95
Query Start/End: Original strand, 108 - 351
Target Start/End: Original strand, 27874539 - 27874782
Alignment:
Q  108 tgttcacacatgttcacaatctcccacttaaagtcacttttgtgagcttccaaaatctctctaccttgccaactccagttgctacgtttccaataggcca 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||  | |||| |||||||||||||||||||| ||||||||||||||||||||||||    
T  27874539 tgttcacacatgttcacaatctcccacttaaagtcacttttgtgagtattcaaagtctctctaccttgccaactctagttgctacgtttccaataggcca 27874638  T
Q  208 tacgaggatcgacaccatacaaacttatcagtgttgatcggctttgtcattacatctgctagattatcattggtgtgaatcttctgcatgtccacacttc 307  Q
    ||| | ||||||||||||| |||||| ||||||||||||| |||||||||| |||||||||| |||||||| ||||||||||||||||| ||||| ||||    
T  27874639 tacaaagatcgacaccatataaacttgtcagtgttgatcgactttgtcattgcatctgctaggttatcattagtgtgaatcttctgcatatccacgcttc 27874738  T
Q  308 cctcctctactacttcgcgaacaaaatgatattgaacgcctatg 351  Q
    | |||||||||||||||||||||||||||||||||| |||||||    
T  27874739 cttcctctactacttcgcgaacaaaatgatattgaatgcctatg 27874782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 120 - 351
Target Start/End: Complemental strand, 18967543 - 18967312
Alignment:
Q  120 ttcacaatctcccacttaaagtcacttttgtgagcttccaaaatctctctaccttgccaactccagttgctacgtttccaataggccatacgaggatcga 219  Q
    |||||||||||||||||||||  ||||||| |||||||||||||||||||||||| || | ||  ||||||| |||| |||||||||||| |||||||||    
T  18967543 ttcacaatctcccacttaaagctacttttgcgagcttccaaaatctctctaccttacccattcatgttgctatgttttcaataggccataggaggatcga 18967444  T
Q  220 caccatacaaacttatcagtgttgatcggctttgtcattacatctgctagattatcattggtgtgaatcttctgcatgtccacacttccctcctctacta 319  Q
    ||||||| |||||| ||||  ||||| || |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  18967443 caccatataaacttgtcagcattgattggttttgtcatcacatctgctagattatcattggtgtgaatcttctgcatgtccacacttccctcctccacta 18967344  T
Q  320 cttcgcgaacaaaatgatattgaacgcctatg 351  Q
    |||  |||||||||||||||| ||||||||||    
T  18967343 cttgtcgaacaaaatgatatttaacgcctatg 18967312  T

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Target: chr6; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 117 - 233
Target Start/End: Complemental strand, 21966604 - 21966493
Alignment:
Q  117 atgttcacaatctcccacttaaagtcacttttgtgagcttccaaaatctctctaccttgccaactcc-agttgctacgtttccaataggccatacgagga 215  Q
    ||||||||||| ||||||||| || ||||||||| || || ||||||||||||||||||||||||||   |||||||||||| |      ||||||||||    
T  21966604 atgttcacaatatcccacttacagccacttttgtaagatttcaaaatctctctaccttgccaactccttattgctacgtttcaa------catacgagga 21966511  T
Q  216 tcgacaccatacaaactt 233  Q
    ||||||||||||||||||    
T  21966510 tcgacaccatacaaactt 21966493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 211 - 344
Target Start/End: Original strand, 1472398 - 1472531
Alignment:
Q  211 gaggatcgacaccatacaaacttatcagtgttgatcggctttgtcattacatctgctagattatcattggtgtgaatcttctgcatgtccacacttccct 310  Q
    |||||||||||||||  ||| || ||||  ||||| | ||||||||| |||||||||| ||| || ||||||||||| |||||||| || ||||| |  |    
T  1472398 gaggatcgacaccatgtaaatttgtcagcattgattgactttgtcataacatctgctaaattgtctttggtgtgaattttctgcatatcaacactccttt 1472497  T
Q  311 cctctactacttcgcgaacaaaatgatattgaac 344  Q
     |||||||||||| ||||||||||| ||||||||    
T  1472498 tctctactacttctcgaacaaaatggtattgaac 1472531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 117 - 177
Target Start/End: Complemental strand, 30968629 - 30968569
Alignment:
Q  117 atgttcacaatctcccacttaaagtcacttttgtgagcttccaaaatctctctaccttgcc 177  Q
    ||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||    
T  30968629 atgttcacaatctcccacttaaagtcacttttgtgagcactcaaaatctctctaccttgcc 30968569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 251 - 348
Target Start/End: Complemental strand, 21965725 - 21965628
Alignment:
Q  251 ttgtcattacatctgctagattatcattggtgtgaatcttctgcatgtccacacttccctcctctactacttcgcgaacaaaatgatattgaacgcct 348  Q
    |||||||||||||| |||| |||||||||||||||   |||||||| ||||| ||||  ||||  |||||||| | |||||||| |||||||||||||    
T  21965725 ttgtcattacatcttctaggttatcattggtgtgagcattctgcatatccacccttcattccttcactacttctcaaacaaaataatattgaacgcct 21965628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 115 - 152
Target Start/End: Original strand, 1472341 - 1472378
Alignment:
Q  115 acatgttcacaatctcccacttaaagtcacttttgtga 152  Q
    |||| |||||||||||||||||||||||||||||||||    
T  1472341 acatcttcacaatctcccacttaaagtcacttttgtga 1472378  T

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Target: chr2 (Bit Score: 172; Significance: 2e-92; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 116 - 351
Target Start/End: Complemental strand, 829958 - 829723
Alignment:
Q  116 catgttcacaatctcccacttaaagtcacttttgtgagcttccaaaatctctctaccttgccaactccagttgctacgtttccaataggccatacgagga 215  Q
    |||||||||||| ||||||||||||  |||||||||||| | |||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  829958 catgttcacaatatcccacttaaagctacttttgtgagcattcaaagtctctctaccttgccaactccagttgctatgtttccaataggccatacgagga 829859  T
Q  216 tcgacaccatacaaacttatcagtgttgatcggctttgtcattacatctgctagattatcattggtgtgaatcttctgcatgtccacacttccctcctct 315  Q
    ||||||||||| |||||| ||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||| ||| ||||| ||||| ||||||    
T  829858 tcgacaccatataaacttgtcagtgttgatcggctttgtcattacatctgctaggttatcattagtgtgaatcttctacatatccacgcttccttcctct 829759  T
Q  316 actacttcgcgaacaaaatgatattgaacgcctatg 351  Q
    |||||||| |||||||||||||||||||||||||||    
T  829758 actacttctcgaacaaaatgatattgaacgcctatg 829723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 116 - 351
Target Start/End: Complemental strand, 28715550 - 28715317
Alignment:
Q  116 catgttcacaatctcccacttaaagtcacttttgtgagcttccaaaatctctctaccttgccaactccagttgctacgtttccaataggccatacgagga 215  Q
    |||||||||||||||||||||||||  || ||| | ||  | |||||||||||||||| ||||||| | |||||||| ||| |||||||||||| |||||    
T  28715550 catgttcacaatctcccacttaaagctacattttttagaattcaaaatctctctacctcgccaacttccgttgctacattttcaataggccatatgagga 28715451  T
Q  216 tcgacaccatacaaacttatcagtgttgatcggctttgtcattacatctgctagattatcattggtgtgaatcttctgcatgtccacacttccctcctct 315  Q
    ||||||| ||| |||||| ||||  ||||||| ||||||||||||||||||||| |||||||||||||||||||| ||||| | ||||| |||||||||     
T  28715450 tcgacactatagaaacttgtcagcattgatcgactttgtcattacatctgctaggttatcattggtgtgaatcttatgcatattcacac-tccctcctcc 28715352  T
Q  316 actacttcgcgaacaaaatgatattgaacgcctatg 351  Q
    || ||| | |||||||||||||||||||| ||||||    
T  28715351 ac-actactcgaacaaaatgatattgaacacctatg 28715317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 115 - 344
Target Start/End: Original strand, 13840763 - 13840995
Alignment:
Q  115 acatgttcacaatctcccacttaaagtcacttttgtgagcttccaaaatctctctaccttgccaactccagttgctacgtttccaataggccatacg--- 211  Q
    ||||||| |||||||| ||||||||   ||||||||||||||| ||||| ||||| ||||||||||||  ||||||| |||||||||||| |||||        
T  13840763 acatgtttacaatctctcacttaaatctacttttgtgagcttctaaaatttctctgccttgccaactcttgttgctatgtttccaataggtcatacttcc 13840862  T
Q  212 -aggatcgacaccatacaaacttatcagtgttgatcggctttgtcattacatctgctagattatcattggtgtgaatcttctgcatgtccacacttccct 310  Q
     ||||||||| |||||||||||||| ||  |||||||| |||||||  ||||| | ||| |||||| | || |||||||||||||  |||| |||||| |    
T  13840863 caggatcgacgccatacaaacttattagcattgatcggttttgtcaccacatccgttaggttatcacttgtctgaatcttctgcacatccatacttcctt 13840962  T
Q  311 cctctactacttcgcgaacaaaatgatattgaac 344  Q
    | || |||||||   |||||||||||||||||||    
T  13840963 cgtcgactactt-ttgaacaaaatgatattgaac 13840995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0074 (Bit Score: 152; Significance: 2e-80; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 120 - 351
Target Start/End: Original strand, 27877 - 28108
Alignment:
Q  120 ttcacaatctcccacttaaagtcacttttgtgagcttccaaaatctctctaccttgccaactccagttgctacgtttccaataggccatacgaggatcga 219  Q
    |||||||||||||||||||||  ||||||| ||||||||||||||||| ||||||||| | ||  ||||||||||||||||||||||||| |||||||||    
T  27877 ttcacaatctcccacttaaagctacttttgcgagcttccaaaatctctttaccttgcccattcatgttgctacgtttccaataggccataggaggatcga 27976  T
Q  220 caccatacaaacttatcagtgttgatcggctttgtcattacatctgctagattatcattggtgtgaatcttctgcatgtccacacttccctcctctacta 319  Q
    ||||||| |||||| ||||  ||||| || ||||| || |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  27977 caccatataaacttgtcagcattgattggttttgtaatcacatctactagattatcattggtgtgaatcttctgcatgtccacacttccctcctccacta 28076  T
Q  320 cttcgcgaacaaaatgatattgaacgcctatg 351  Q
    |||| |||||||||||||||||||||||||||    
T  28077 cttctcgaacaaaatgatattgaacgcctatg 28108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 136; Significance: 7e-71; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 120 - 339
Target Start/End: Original strand, 2323956 - 2324175
Alignment:
Q  120 ttcacaatctcccacttaaagtcacttttgtgagcttccaaaatctctctaccttgccaactccagttgctacgtttccaataggccatacgaggatcga 219  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| | ||  ||||||||||||||||||| |||||||| ||||||    
T  2323956 ttcacaatctcccacttaaagccacttttgtgagcttccaaaatctctctaccttgcccattcatgttgctacgtttccaatagtccatacgatgatcga 2324055  T
Q  220 caccatacaaacttatcagtgttgatcggctttgtcattacatctgctagattatcattggtgtgaatcttctgcatgtccacacttccctcctctacta 319  Q
    ||||||| ||||||   ||  ||||| ||||||||||| |||||||||||  ||||||||||||| ||||||||||| |||||||||||||||| |||||    
T  2324056 caccatataaacttggtagcattgattggctttgtcatcacatctgctagggtatcattggtgtggatcttctgcatatccacacttccctcctttacta 2324155  T
Q  320 cttcgcgaacaaaatgatat 339  Q
    |||| |||||||||||||||    
T  2324156 cttctcgaacaaaatgatat 2324175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 211 - 344
Target Start/End: Original strand, 7504696 - 7504829
Alignment:
Q  211 gaggatcgacaccatacaaacttatcagtgttgatcggctttgtcattacatctgctagattatcattggtgtgaatcttctgcatgtccacacttccct 310  Q
    |||||||||||||||  ||| || ||||| ||||| | ||||||||| |||||||||| ||| || ||||||||||| || ||||| || ||||| || |    
T  7504696 gaggatcgacaccatgtaaatttgtcagtattgattgactttgtcataacatctgctaaattgtctttggtgtgaattttttgcatatcaacactccctt 7504795  T
Q  311 cctctactacttcgcgaacaaaatgatattgaac 344  Q
     |||||| ||||| ||||||||||| ||||||||    
T  7504796 tctctaccacttctcgaacaaaatggtattgaac 7504829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 113 - 314
Target Start/End: Complemental strand, 22510398 - 22510198
Alignment:
Q  113 acacatgttcacaatctcccacttaaagtcacttttgtgagcttccaaaatctctctaccttgccaactccagttgctacgtttccaataggccatacga 212  Q
    |||||||||||| |||||  | ||||||  | ||||| |||||| |||||| ||||||||||||||||||| ||| ||| ||||  ||||||||| |       
T  22510398 acacatgttcactatctc--aattaaagctatttttgggagctttcaaaatatctctaccttgccaactcctgtttctatgttttgaataggccacagag 22510301  T
Q  213 ggatcgacaccatacaaacttatcagtgttga-tcggctttgtcattacatctgctagattatcattggtgtgaatcttctgcatgtccacacttccctc 311  Q
    |||| ||||||||| |||||||||| | |||| | | |||| |||| ||||||||| | |||||||  || ||||||||| |||| ||||||  ||||||    
T  22510300 ggattgacaccatataaacttatcaatattgattagactttttcatcacatctgcttggttatcatcagtttgaatcttcggcatatccacatgtccctc 22510201  T
Q  312 ctc 314  Q
    |||    
T  22510200 ctc 22510198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 212 - 341
Target Start/End: Complemental strand, 37957162 - 37957033
Alignment:
Q  212 aggatcgacaccatacaaacttatcagtgttgatcggctttgtcattacatctgctagattatcattggtgtgaatcttctgcatgtccacacttccctc 311  Q
    |||||||||| |||| ||||||||||   || || | ||||||||| |||  |||||||  ||| ||  |||||||||  ||||||||||||||||| ||    
T  37957162 aggatcgacatcatataaacttatcaccattaattgactttgtcatcacacttgctagacaatctttattgtgaatctattgcatgtccacacttccttc 37957063  T
Q  312 ctctactacttcgcgaacaaaatgatattg 341  Q
    |||||||||||||| |||| ||||||||||    
T  37957062 ctctactacttcgcaaacataatgatattg 37957033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 115 - 152
Target Start/End: Original strand, 7504639 - 7504676
Alignment:
Q  115 acatgttcacaatctcccacttaaagtcacttttgtga 152  Q
    |||| |||||||||||||||||||||| ||||||||||    
T  7504639 acatcttcacaatctcccacttaaagttacttttgtga 7504676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.000000000008; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 250 - 350
Target Start/End: Complemental strand, 34973826 - 34973726
Alignment:
Q  250 tttgtcattacatctgctagattatcattggtgtgaatcttctgcatgtccacacttccctcctctactacttcgcgaacaaaatgatattgaacgccta 349  Q
    |||||| | ||||||  ||| |||||||| |||||||||||| |||| |||||||||| ||| || |||||||| | || ||||||||||| || |||||    
T  34973826 tttgtcgtcacatcttttaggttatcattagtgtgaatcttcagcatatccacacttctctcttccactacttctcaaataaaatgatattaaatgccta 34973727  T
Q  350 t 350  Q
    |    
T  34973726 t 34973726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 118 - 219
Target Start/End: Original strand, 41413422 - 41413523
Alignment:
Q  118 tgttcacaatctcccacttaaagtcacttttgtgagcttccaaaatctctctaccttgccaactccagttgctacgtttccaataggccatacgaggatc 217  Q
    |||||||||||| ||| |||||   ||||||| |||||| |||||| ||||| ||||||| | ||  ||||||| ||||| ||||| ||| ||||| |||    
T  41413422 tgttcacaatcttccatttaaaactacttttgcgagctttcaaaatatctctgccttgcccattcttgttgctatgtttctaatagaccaaacgagaatc 41413521  T
Q  218 ga 219  Q
    ||    
T  41413522 ga 41413523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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