View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0768_low_27 (Length: 360)

Name: NF0768_low_27
Description: NF0768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0768_low_27
NF0768_low_27
[»] chr5 (3 HSPs)
chr5 (23-233)||(26091137-26091356)
chr5 (229-292)||(26078293-26078356)
chr5 (87-138)||(6834042-6834093)
[»] chr8 (2 HSPs)
chr8 (87-143)||(6197898-6197954)
chr8 (82-136)||(38414305-38414359)
[»] chr7 (2 HSPs)
chr7 (87-134)||(45578023-45578070)
chr7 (75-137)||(39854720-39854782)


Alignment Details
Target: chr5 (Bit Score: 112; Significance: 1e-56; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 23 - 233
Target Start/End: Complemental strand, 26091356 - 26091137
Alignment:
Q  23 cacatttaaatggtgtaccgatatttactccggtctgcacctnnnnnnnnnt-tcttcaatcttaattataaataaaattttactttttagatccattaa 121  Q
    ||||||||||||||||||||||||||||| |||||| |||||           ||||||||  ||||||||||||| |||||||||||||||||||||||    
T  26091356 cacatttaaatggtgtaccgatatttacttcggtcttcacctaaagaaaaaaatcttcaataataattataaataatattttactttttagatccattaa 26091257  T
Q  122 acaattaatgtatttaa--------actatattattgaccaatattttttcatctaaataaataaatgtaaagggaagtgatttttaagaatcaaaactt 213  Q
    |||||| |||||| |||        ||||||||||||||||||||||||||||| |||||||||||||||||||||| || |||||||||||||||||||    
T  26091256 acaattgatgtatctaatataataaactatattattgaccaatattttttcatccaaataaataaatgtaaagggaaatggtttttaagaatcaaaactt 26091157  T
Q  214 ttaaataccgtgttggacat 233  Q
    ||||||||||||||||||||    
T  26091156 ttaaataccgtgttggacat 26091137  T

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Target: chr5; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 229 - 292
Target Start/End: Complemental strand, 26078356 - 26078293
Alignment:
Q  229 gacataaagaaggtcttagtcgaattttgtattgcttgattcactctttggtctcatgaaaaaa 292  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  26078356 gacataaagaaggtctttgtcgaattttgtattgcttgattcactctttggtctcatgaaaaaa 26078293  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 87 - 138
Target Start/End: Original strand, 6834042 - 6834093
Alignment:
Q  87 attataaataaaattttactttttagatccattaaacaattaatgtatttaa 138  Q
    ||||||| ||||||||||||||||||||  ||| || |||||||||||||||    
T  6834042 attataagtaaaattttactttttagatatattgaataattaatgtatttaa 6834093  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 87 - 143
Target Start/End: Complemental strand, 6197954 - 6197898
Alignment:
Q  87 attataaataaaattttactttttagatccattaaacaattaatgtatttaaactat 143  Q
    |||||||  |||| |||||||||||||| ||||||| ||||||||||||||| ||||    
T  6197954 attataagcaaaactttactttttagatacattaaataattaatgtatttaatctat 6197898  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 82 - 136
Target Start/End: Complemental strand, 38414359 - 38414305
Alignment:
Q  82 tcttaattataaataaaattttactttttagatccattaaacaattaatgtattt 136  Q
    |||||||||||||||||| || ||||||||||| |||| || ||| |||||||||    
T  38414359 tcttaattataaataaaagttcactttttagattcattcaataatgaatgtattt 38414305  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 87 - 134
Target Start/End: Original strand, 45578023 - 45578070
Alignment:
Q  87 attataaataaaattttactttttagatccattaaacaattaatgtat 134  Q
    ||||||| |||||||| ||||||||||| |||| ||||||||||||||    
T  45578023 attataagtaaaatttcactttttagatacattgaacaattaatgtat 45578070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 75 - 137
Target Start/End: Original strand, 39854720 - 39854782
Alignment:
Q  75 tcttcaatcttaattataaataaaattttactttttagatccattaaacaattaatgtattta 137  Q
    ||||| |||| ||||||||||||||||||| |||||||||  ||| || || |||||||||||    
T  39854720 tcttcgatctcaattataaataaaattttagtttttagatttatttaataactaatgtattta 39854782  T

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