View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0768_low_28 (Length: 360)
Name: NF0768_low_28
Description: NF0768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0768_low_28 |
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Alignment Details
Target: chr5 (Bit Score: 104; Significance: 9e-52; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 142 - 273
Target Start/End: Original strand, 12396447 - 12396577
Alignment:
| Q |
142 |
aacaccctaattgatccttcatcgtgcatatacaacattaacagtctttcgcacccctaattgaacatccttaatttctactggggttagctcatatttt |
241 |
Q |
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| T |
12396447 |
aacaccctaattgatcattcatcgtgcatatacaacattaaccgtctttcgcacccctaattgaacatccctaatttcta-ttgggttagctcatatttt |
12396545 |
T |
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| Q |
242 |
ttaacatcaattgattttgtgtggaaggaggt |
273 |
Q |
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| T |
12396546 |
tcaacatcaattgattttgtgtggaaggaggt |
12396577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 142 - 279
Target Start/End: Original strand, 12396201 - 12396337
Alignment:
| Q |
142 |
aacaccctaattgatccttcatcgtgcatatacaacattaacagtctttcgcacccctaattgaacatccttaatttctactggggttagctcatatttt |
241 |
Q |
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||||||||||||||||||||||| ||||| ||||||||||| ||||| ||||||| ||||||||||||| || |||||| | || ||| |||||||||| |
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| T |
12396201 |
aacaccctaattgatccttcatcttgcatttacaacattaattgtcttgcgcacccttaattgaacatccctactttctagt-ggattatctcatatttt |
12396299 |
T |
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| Q |
242 |
ttaacatcaattgattttgtgtggaaggaggtgatgcc |
279 |
Q |
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| T |
12396300 |
tcaacatcaattgattttatgtggaaggaggtgatgcc |
12396337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 142 - 211
Target Start/End: Original strand, 12385329 - 12385398
Alignment:
| Q |
142 |
aacaccctaattgatccttcatcgtgcatatacaacattaacagtctttcgcacccctaattgaacatcc |
211 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||| | ||| | ||||||||||||| |
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| T |
12385329 |
aacaccctaattgatccttcatcgtgcatatacaacattaattgtcttgcacactcttaattgaacatcc |
12385398 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 225 - 279
Target Start/End: Original strand, 12396024 - 12396078
Alignment:
| Q |
225 |
gggttagctcatattttttaacatcaattgattttgtgtggaaggaggtgatgcc |
279 |
Q |
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| T |
12396024 |
gggttagctcatctttttcaacatgaattgattttatgtggaaggaggtgatgcc |
12396078 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 46 - 87
Target Start/End: Original strand, 12396351 - 12396392
Alignment:
| Q |
46 |
attgaatcaaaaataactcaaacacatccaaatcaaatgcgg |
87 |
Q |
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|||| |||||||||||||||||||||||| |||||||||||| |
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| T |
12396351 |
attggatcaaaaataactcaaacacatccgaatcaaatgcgg |
12396392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 47 - 87
Target Start/End: Original strand, 12396095 - 12396135
Alignment:
| Q |
47 |
ttgaatcaaaaataactcaaacacatccaaatcaaatgcgg |
87 |
Q |
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||||||||||||||||||||| |||||| |||||||||||| |
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| T |
12396095 |
ttgaatcaaaaataactcaaatacatccgaatcaaatgcgg |
12396135 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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