View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0768_low_29 (Length: 355)
Name: NF0768_low_29
Description: NF0768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0768_low_29 |
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Alignment Details
Target: chr2 (Bit Score: 285; Significance: 1e-160; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 1 - 305
Target Start/End: Complemental strand, 18366503 - 18366199
Alignment:
| Q |
1 |
tactcttgaatattacccctatgccttctgacattaaacctcaatatgctatataattcaaaaatgttactagtgaaaaaataactacatattttacaac |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
18366503 |
tactcttgaatattacccctatgccttctgacattaaacctcaatatgctatataattcaaaaatgttactagtgaaaaaataactacatcttttacaac |
18366404 |
T |
|
| Q |
101 |
tattctagttaaatcaaagacaaacaaatgaatcaatttacatgaataacaaataaaagttgtaaatattgggggtcttgcattctctactccatttaaa |
200 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||| |
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| T |
18366403 |
tattctagttaaatcagagacaaacaaatgaatcaatttacatgaataacaaataaaagttgtaaatattgggggtgttgcattctccactccatttaaa |
18366304 |
T |
|
| Q |
201 |
aacattatgtcctaaaaattgaattatagcttaacttaaaacattgtttctaaaaggttcaagagcaaaggaactctaaacctcaacactagagaatagc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
18366303 |
aacattatgtcctaaaaattgaattatagcttaacttaaaacattgtttctaaaaggttcaagagcaaaggaactctaaacctcaacactagagaacagc |
18366204 |
T |
|
| Q |
301 |
cacta |
305 |
Q |
| |
|
||||| |
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|
| T |
18366203 |
cacta |
18366199 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 199 - 305
Target Start/End: Complemental strand, 30937181 - 30937075
Alignment:
| Q |
199 |
aaaacattatgtcctaaaaattgaattatagcttaacttaaaacattgtttctaaaaggttcaagagcaaaggaactctaaacctcaacactagagaata |
298 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| | |
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| T |
30937181 |
aaaacattatgtcctaaaaattgaattatagcttaacttaaaacattgtttctaaaaggttcaagagcagaggaactctaaacctcaacactagagaaca |
30937082 |
T |
|
| Q |
299 |
gccacta |
305 |
Q |
| |
|
||||||| |
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|
| T |
30937081 |
gccacta |
30937075 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 211 - 245
Target Start/End: Complemental strand, 30937208 - 30937174
Alignment:
| Q |
211 |
cctaaaaattgaattatagcttaacttaaaacatt |
245 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
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| T |
30937208 |
cctaaaaattgaattatagcttaacttaaaacatt |
30937174 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 1 - 305
Target Start/End: Original strand, 22588272 - 22588576
Alignment:
| Q |
1 |
tactcttgaatattacccctatgccttctgacattaaacctcaatatgctatataattcaaaaatgttactagtgaaaaaataactacatattttacaac |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||| |
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|
| T |
22588272 |
tactcttgaatattacccctatgccttctgacattaaacctcaatatgctatataattcaaaaatgttactggtgaaaaaataactacatcttttacaac |
22588371 |
T |
|
| Q |
101 |
tattctagttaaatcaaagacaaacaaatgaatcaatttacatgaataacaaataaaagttgtaaatattgggggtcttgcattctctactccatttaaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| |||||||||| ||||||||||| |
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|
| T |
22588372 |
tattctagttaaatcaaagacaaacaaatgaatcaatttatatgaataacaaataaaagttataaatattgggggtgttgcattctccactccatttaag |
22588471 |
T |
|
| Q |
201 |
aacattatgtcctaaaaattgaattatagcttaacttaaaacattgtttctaaaaggttcaagagcaaaggaactctaaacctcaacactagagaatagc |
300 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
22588472 |
aacattatgtcctaaaaattgaattatagcttaacttaaaacattgtttctaaaaggttcaagagcaaaggaactctaaacctcaacactagagaacagc |
22588571 |
T |
|
| Q |
301 |
cacta |
305 |
Q |
| |
|
||||| |
|
|
| T |
22588572 |
cacta |
22588576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 157; Significance: 2e-83; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 110 - 294
Target Start/End: Original strand, 15348031 - 15348215
Alignment:
| Q |
110 |
taaatcaaagacaaacaaatgaatcaatttacatgaataacaaataaaagttgtaaatattgggggtcttgcattctctactccatttaaaaacattatg |
209 |
Q |
| |
|
|||||||||||||||||||||| |||||||| |||||||||||||||||||| |||||||||||||| |||||||||| ||||||||||||||||||||| |
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|
| T |
15348031 |
taaatcaaagacaaacaaatgagtcaatttatatgaataacaaataaaagttataaatattgggggtgttgcattctccactccatttaaaaacattatg |
15348130 |
T |
|
| Q |
210 |
tcctaaaaattgaattatagcttaacttaaaacattgtttctaaaaggttcaagagcaaaggaactctaaacctcaacactagag |
294 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| |
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|
| T |
15348131 |
tcctaaaaattgaattatagcttaacttaaaacattgtttctaaaaggttcaagagcaaaggaactctaaatctcaaaactagag |
15348215 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 110 - 294
Target Start/End: Original strand, 15437096 - 15437280
Alignment:
| Q |
110 |
taaatcaaagacaaacaaatgaatcaatttacatgaataacaaataaaagttgtaaatattgggggtcttgcattctctactccatttaaaaacattatg |
209 |
Q |
| |
|
|||||||||||||||||||||| |||||||| |||||||||||||||||||| |||||||||||||| |||||||||| ||||||||||||||||||||| |
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|
| T |
15437096 |
taaatcaaagacaaacaaatgagtcaatttatatgaataacaaataaaagttataaatattgggggtgttgcattctccactccatttaaaaacattatg |
15437195 |
T |
|
| Q |
210 |
tcctaaaaattgaattatagcttaacttaaaacattgtttctaaaaggttcaagagcaaaggaactctaaacctcaacactagag |
294 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| |
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| T |
15437196 |
tcctaaaaattgaattatagcttaacttaaaacattgtttctaaaaggttcaagagcaaaggaactctaaatctcaaaactagag |
15437280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 110 - 294
Target Start/End: Original strand, 15528400 - 15528584
Alignment:
| Q |
110 |
taaatcaaagacaaacaaatgaatcaatttacatgaataacaaataaaagttgtaaatattgggggtcttgcattctctactccatttaaaaacattatg |
209 |
Q |
| |
|
|||||||||||||||||||||| |||||||| |||||||||||||||||||| |||||||||||||| |||||||||| ||||||||||||||||||||| |
|
|
| T |
15528400 |
taaatcaaagacaaacaaatgagtcaatttatatgaataacaaataaaagttataaatattgggggtgttgcattctccactccatttaaaaacattatg |
15528499 |
T |
|
| Q |
210 |
tcctaaaaattgaattatagcttaacttaaaacattgtttctaaaaggttcaagagcaaaggaactctaaacctcaacactagag |
294 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| |
|
|
| T |
15528500 |
tcctaaaaattgaattatagcttaacttaaaacattgtttctaaaaggttcaagagcaaaggaactctaaatctcaaaactagag |
15528584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 50 - 84
Target Start/End: Complemental strand, 19909865 - 19909831
Alignment:
| Q |
50 |
tatataattcaaaaatgttactagtgaaaaaataa |
84 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||| |
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|
| T |
19909865 |
tatataattaaaaaatgttactagtgaaaaaataa |
19909831 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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