View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0768_low_3 (Length: 676)
Name: NF0768_low_3
Description: NF0768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0768_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 533; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 533; E-Value: 0
Query Start/End: Original strand, 36 - 648
Target Start/End: Original strand, 15596504 - 15597116
Alignment:
| Q |
36 |
tagaatacacaaagccttatactttggaatatgagtttcatgagatacgataagtagtggtcagtcaagcgggtagccgtttccagtgagaagtgttaag |
135 |
Q |
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| T |
15596504 |
tagaatacacaaagccttgtactttggaatatgagtttcatgagatacgataagtagtggtcagtcaagcgggtagccgtttccagtgagaagtgttaag |
15596603 |
T |
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| Q |
136 |
agacgagtaagaaattttttaagcgccaagttcataaatgagaagactcaagtagtcgatgaagatgtagtaagagcatgatagacgtagttctacctga |
235 |
Q |
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| T |
15596604 |
agacgagtaagaaatttttgaagcgccaagttcaataatgagaagactcaagtagtcgatgaagatgcagtaagagcatgatagacgtagttctacctga |
15596703 |
T |
|
| Q |
236 |
ctaagtcaagagagtttagaatcatctctagtatggtagtccggtagttcatctcagtaagcacaaggaatgtcagtcagctagaaaggagtcgtgtgcg |
335 |
Q |
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| T |
15596704 |
gtaagtcaagagagtttagaatcgtctctagtatggtagtccagtagttcagctcagtaagcacaaggaatgtcagtcagctagaaaggagtcgtgtgcg |
15596803 |
T |
|
| Q |
336 |
aggcaaaagaatgaatgtgatatctagaaggtttttctcaaggctcatgataacgtttgaagtagcaagtgtagtaacatgaaattgaaatgggaagacg |
435 |
Q |
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| T |
15596804 |
aggcaaaagaatgaatgtgatatccagaaggcttttctcaaggctcaaggtaacgtttgaagtagcaagtgtagtaacatgaaattgaaatgggaagacg |
15596903 |
T |
|
| Q |
436 |
ccactcaaataagattgacagtatccaagccttatctagatgtggaatacggacagtccaaattcggtgttcttgaaatatagaaaagggatgtcgtcat |
535 |
Q |
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| T |
15596904 |
ccactcaaataagattgacagtatccaagccttatctagatgtggaatacggacagtccaacctcggtgttcttgaaatatagaaaagcgatgtcgtgac |
15597003 |
T |
|
| Q |
536 |
gcaagttagaaatcttcgtgatctatgttatgtggttatgtatgtttaagcaatatgcgagataagaggaagatgagattattagtttctttatactaac |
635 |
Q |
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| T |
15597004 |
gcaagttagaaatcttcgtgacctatgttatgtggttatgtatgtttaagctatatgcgagataagaggaagatgagattattagtttctttatactaac |
15597103 |
T |
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| Q |
636 |
agttgggagatgt |
648 |
Q |
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| T |
15597104 |
agttgggagatgt |
15597116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 215; E-Value: 1e-117
Query Start/End: Original strand, 11 - 257
Target Start/End: Original strand, 15596263 - 15596509
Alignment:
| Q |
11 |
cagagattgatcggcaaggaattaatagaatacacaaagccttatactttggaatatgagtttcatgagatacgataagtagtggtcagtcaagcgggta |
110 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
15596263 |
cagaaattgatcggcaaggaattaatagaatacacaaagccttgtactttggaatatgagtttcatgagatacgataagtagtggtcagtcaagctggta |
15596362 |
T |
|
| Q |
111 |
gccgtttccagtgagaagtgttaagagacgagtaagaaattttttaagcgccaagttcataaatgagaagactcaagtagtcgatgaagatgtagtaaga |
210 |
Q |
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| T |
15596363 |
gccgtttccagtgagaagtgttaagagacgagtaagaaatttttgaagcgccaagttcaataatgagaagactcaagtagtcgatgaagatgcagtaaga |
15596462 |
T |
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| Q |
211 |
gcatgatagacgtagttctacctgactaagtcaagagagtttagaat |
257 |
Q |
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| T |
15596463 |
gcatgatagacgtagttctacctgagtaagtcaagagagtttagaat |
15596509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 59 - 169
Target Start/End: Original strand, 14735044 - 14735154
Alignment:
| Q |
59 |
ttggaatatgagtttcatgagatacgataagtagtggtcagtcaagcgggtagccgtttccagtgagaagtgttaagagacgagtaagaaattttttaag |
158 |
Q |
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| T |
14735044 |
ttggaataggagtttcatgagataggataagtagccgttagtcaagcggttagccatttctagtgagaagtattgagagatgagtaagaaattcttgaag |
14735143 |
T |
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| Q |
159 |
cgccaagttca |
169 |
Q |
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| T |
14735144 |
caccaggttca |
14735154 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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