View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0768_low_30 (Length: 351)
Name: NF0768_low_30
Description: NF0768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0768_low_30 |
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Alignment Details
Target: chr2 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 1 - 321
Target Start/End: Complemental strand, 15180546 - 15180226
Alignment:
| Q |
1 |
tccaccaaaacctgttgctttgttataacaatgcacacctgtgattatgttagcttgtcccctaacaacaattccaatggctgctgagaaaattgcgaca |
100 |
Q |
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| T |
15180546 |
tccaccaaaacctgttgctttgttataacaatgcacacctgtgattatgttagcttgtcccctaacaacaattccaatggctgctgagaaaattgcgaca |
15180447 |
T |
|
| Q |
101 |
tcagtgatagcattgtcgttgctagcaagatcaattgcagttcccgaaaattgtctttcgcctttgtctccgccgactgttgagtgttgtccaagaaaac |
200 |
Q |
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| T |
15180446 |
tcggtgatagcattgtcattgctagcaagatcaattgcagttccagaaaattgtctttcgcctttgtctccaccgactgttgagtgttgtccaagaaaac |
15180347 |
T |
|
| Q |
201 |
tacttgatatgaaggtttcatggccactttgaactttaattccttctgtgttgaaatggaggaagaaacaattgtcgattctaattctagctgaatcgac |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
15180346 |
tacttgatatgaaggtttcatggccactttgaactttaattccttctgtgttgaaatggaggaagaaacaattgtcgattctgattctagctgaatcgac |
15180247 |
T |
|
| Q |
301 |
gatgagtattcctccaactcg |
321 |
Q |
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||||| |||||||||| |||| |
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| T |
15180246 |
gatgaatattcctccacctcg |
15180226 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 59; Significance: 6e-25; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 5 - 267
Target Start/End: Original strand, 38859351 - 38859613
Alignment:
| Q |
5 |
ccaaaacctgttgctttgttataacaatgcacacctgtgattatgttagcttgtcccctaacaacaattccaatggctgctgagaaaattgcgacatcag |
104 |
Q |
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||||| |||| ||||||||||||||||||||| |||| | |||||||| || || || | ||||| ||| ||||||| |||||||| |||||||||| |
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| T |
38859351 |
ccaaatcctgctgctttgttataacaatgcacccctgatagaatgttagcctgacctcttagcacaataccagtggctgccgagaaaatcgcgacatcag |
38859450 |
T |
|
| Q |
105 |
tgatagcattgtcgttgctagcaagatcaattgcagttcccgaaaattgtctttcgcctttgtctccgccgactgttgagtgttgtccaagaaaactact |
204 |
Q |
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|||| |||||||| || |||||||||||||| | || ||| | | | ||||| | ||| ||||| ||||||||||||||||||||||||| ||| |
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| T |
38859451 |
tgattgcattgtcattactagcaagatcaataccgaccccggaatagtccttctcgccatggtcaccgccaactgttgagtgttgtccaagaaaacaact |
38859550 |
T |
|
| Q |
205 |
tgatatgaaggtttcatggccactttgaactttaattccttctgtgttgaaatggaggaagaa |
267 |
Q |
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||||||||| || ||||| || || ||| ||||||||||||| ||||||| | |||||| |
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| T |
38859551 |
tgatatgaatgtctcatgcccttgctgcactagaattccttctgtggtgaaatgcaagaagaa |
38859613 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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