View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0768_low_33 (Length: 347)
Name: NF0768_low_33
Description: NF0768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0768_low_33 |
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| [»] chr3 (6 HSPs) |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 105; Significance: 2e-52; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 215 - 347
Target Start/End: Original strand, 29712860 - 29712992
Alignment:
| Q |
215 |
cagcttcgtttgtagcatgaaggggtcctgtacgaagaaagctaaaggtgagagcacgacaaagccaaattggctcgaacttccaatagacctgatgaag |
314 |
Q |
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| T |
29712860 |
cagcttcgattttagcatgaagctttcctgtacgaagaaagctaaaggtgagagcacgacaaagccaaattggcttgaacttccaatagacctgatgaag |
29712959 |
T |
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| Q |
315 |
aacatacttcaaagacttgatactgttgaaatt |
347 |
Q |
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| T |
29712960 |
aacatactccaaagacttgatactgttgaaatt |
29712992 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 29 - 154
Target Start/End: Original strand, 29712674 - 29712799
Alignment:
| Q |
29 |
atactgttcatcacctcatcttcaccattcaatttaaaaggttggtataattttcaatttattttcatctatctttttggctatttcagtactatcattg |
128 |
Q |
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| T |
29712674 |
atacagttcatcacttcatcttcaccgttcaatttacaaggttggtgtaatttccaatttattttcatctatctttttggctatttcagtactatcattg |
29712773 |
T |
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| Q |
129 |
gtctgcaatttgtaactgtaactcac |
154 |
Q |
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| T |
29712774 |
gtctgcaatttgtaactgtagctcac |
29712799 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 215 - 343
Target Start/End: Complemental strand, 29747155 - 29747027
Alignment:
| Q |
215 |
cagcttcgtttgtagcatgaaggggtcctgtacgaagaaagctaaaggtgagagcacgacaaagccaaattggctcgaacttccaatagacctgatgaag |
314 |
Q |
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| T |
29747155 |
cagcatcgtttgtagcatgaaggggtcgtgtatcaagaaagctaaagttgatagcacgacaaagccaaactggcttgaacttccgataggcttgacaaag |
29747056 |
T |
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| Q |
315 |
aacatacttcaaagacttgatactgttga |
343 |
Q |
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| T |
29747055 |
aacatacttcagagacttggtactattga |
29747027 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 248 - 347
Target Start/End: Original strand, 29751764 - 29751863
Alignment:
| Q |
248 |
gaagaaagctaaaggtgagagcacgacaaagccaaattggctcgaacttccaatagacctgatgaagaacatacttcaaagacttgatactgttgaaatt |
347 |
Q |
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| T |
29751764 |
gaagaaagtgaaagttgagtgcatgacaaagccaaactggattgaacttccaattgacttgacaaagaacatacttcggagacttgataccgttgaaatt |
29751863 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 258 - 322
Target Start/End: Original strand, 29698802 - 29698866
Alignment:
| Q |
258 |
aaaggtgagagcacgacaaagccaaattggctcgaacttccaatagacctgatgaagaacatact |
322 |
Q |
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| T |
29698802 |
aaagatgagagcacaagaaagccaaactggcttgaacttccaatagaattgacgaagaacatact |
29698866 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 263 - 307
Target Start/End: Original strand, 29721021 - 29721065
Alignment:
| Q |
263 |
tgagagcacgacaaagccaaattggctcgaacttccaatagacct |
307 |
Q |
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| T |
29721021 |
tgagagcacaccaaagccaaattggcttgaacttccaagagacct |
29721065 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 222 - 347
Target Start/End: Complemental strand, 1153117 - 1152992
Alignment:
| Q |
222 |
gtttgtagcatgaaggggtcctgtacgaagaaagctaaaggtgagagcacgacaaagccaaattggctcgaacttccaatagacctgatgaagaacatac |
321 |
Q |
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| T |
1153117 |
gtttgtagcatgaagaggtcttgtgtggaaaaagcgaaagttgagagcacaagaaatccaaattggcttcaacttccaatagacttgataaggaacatcc |
1153018 |
T |
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| Q |
322 |
ttcaaagacttgatactgttgaaatt |
347 |
Q |
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| T |
1153017 |
ttcaaagactggatactgttgaaatt |
1152992 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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