View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0768_low_34 (Length: 346)

Name: NF0768_low_34
Description: NF0768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0768_low_34
NF0768_low_34
[»] scaffold0044 (1 HSPs)
scaffold0044 (1-333)||(88217-88549)
[»] chr3 (11 HSPs)
chr3 (211-277)||(2679151-2679217)
chr3 (211-266)||(2687069-2687124)
chr3 (174-267)||(9585876-9585969)
chr3 (139-267)||(764299-764427)
chr3 (175-282)||(2697455-2697562)
chr3 (213-277)||(988688-988752)
chr3 (131-306)||(9595281-9595456)
chr3 (131-187)||(7325171-7325227)
chr3 (234-306)||(7334926-7334998)
chr3 (131-219)||(7443736-7443824)
chr3 (211-266)||(9497189-9497245)
[»] chr7 (1 HSPs)
chr7 (132-303)||(27754859-27755030)
[»] chr5 (2 HSPs)
chr5 (228-290)||(20305163-20305225)
chr5 (228-290)||(20309567-20309629)
[»] chr2 (1 HSPs)
chr2 (162-288)||(7169398-7169524)
[»] chr4 (1 HSPs)
chr4 (162-277)||(20020503-20020618)
[»] scaffold0015 (1 HSPs)
scaffold0015 (192-272)||(41103-41187)
[»] chr6 (1 HSPs)
chr6 (135-277)||(24418154-24418296)


Alignment Details
Target: scaffold0044 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 1 - 333
Target Start/End: Original strand, 88217 - 88549
Alignment:
Q  1 cgcttcttccatcactttacacacgtcaaatggccgacgaccaaaccaacatggcttcttctctgccactcacggctgccagtaagaggcagcaattgaa 100  Q
    |||||||||| |||||||||  |||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  88217 cgcttcttccgtcactttacgtacgtcaaatggccgacgaccgaaccgacatggcttcttctctgccactcacggctgccactaagaggcagcaattgaa 88316  T
Q  101 cacctccaccgaaaccctatcatcgtcgctgcttccaactcttccattcgatgtgatctctgaaattctctgcaggcttccagtgaagctgctcctacaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  88317 cacctccaccgaaaccctatcatcgtcgctgcttccaactcttccgttcgatgtgatctctgaaattctctgcaggcttccagtgaagcttctcctacaa 88416  T
Q  201 cttagttgcctctgcaagtcatggaaatctctaatctccgatccaaaatttacaaaaaagcaccttcgcatgtcaacaacgctccaccacatcatggtaa 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  88417 cttagttgcctctgcaagtcatggaaatctctaatctccgatccaaaatttacaaaaaagcaccttcgcatgtcaacaacgctccaccacatcatggtaa 88516  T
Q  301 cctctacagacgactcacatgagttggttctct 333  Q
    |||||||||||||||||||||||||||||||||    
T  88517 cctctacagacgactcacatgagttggttctct 88549  T

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Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 211 - 277
Target Start/End: Complemental strand, 2679217 - 2679151
Alignment:
Q  211 tctgcaagtcatggaaatctctaatctccgatccaaaatttacaaaaaagcaccttcgcatgtcaac 277  Q
    |||||||||||||||||||||| |||||||||||||||||| | || ||||||||| || |||||||    
T  2679217 tctgcaagtcatggaaatctctgatctccgatccaaaatttgctaagaagcaccttagcgtgtcaac 2679151  T

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Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 211 - 266
Target Start/End: Complemental strand, 2687124 - 2687069
Alignment:
Q  211 tctgcaagtcatggaaatctctaatctccgatccaaaatttacaaaaaagcacctt 266  Q
    |||||||||||||||||||||| |||||||||||||||||| | || |||||||||    
T  2687124 tctgcaagtcatggaaatctctgatctccgatccaaaatttgctaagaagcacctt 2687069  T

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Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 174 - 267
Target Start/End: Complemental strand, 9585969 - 9585876
Alignment:
Q  174 aggcttccagtgaagctgctcctacaacttagttgcctctgcaagtcatggaaatctctaatctccgatccaaaatttacaaaaaagcaccttc 267  Q
    |||||||| |||||||| ||||| ||||||   |||||| |||| || | ||||||||||||||||||||| ||||| ||||| ||||| ||||    
T  9585969 aggcttccggtgaagctcctccttcaacttcagtgcctcggcaaatcgttgaaatctctaatctccgatcctaaattcacaaagaagcatcttc 9585876  T

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Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 139 - 267
Target Start/End: Complemental strand, 764427 - 764299
Alignment:
Q  139 ctcttccattcgatgtgatctctgaaattctctgcaggcttccagtgaagctgctcctacaacttagttgcctctgcaagtcatggaaatctctaatctc 238  Q
    ||||||| |||||| || |  |||| ||| |||| ||||||||||||||||| ||||| ||||||   |||||| | || |  |||||||||||||| ||    
T  764427 ctcttcccttcgatctggttgctgagattttctgtaggcttccagtgaagctcctccttcaacttcagtgcctcggaaaattgtggaaatctctaatttc 764328  T
Q  239 cgatccaaaatttacaaaaaagcaccttc 267  Q
    |||||| ||||| ||||| ||||| ||||    
T  764327 cgatcctaaattcacaaagaagcatcttc 764299  T

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Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 175 - 282
Target Start/End: Complemental strand, 2697562 - 2697455
Alignment:
Q  175 ggcttccagtgaagctgctcctacaacttagttgcctctgcaagtcatggaaatctctaatctccgatccaaaatttacaaaaaagcaccttcgcatgtc 274  Q
    |||| ||||||||| | |||||||||||| | ||| |||| ||||||||||| ||||||||| | ||| | |  ||||| || ||||||||| |||||||    
T  2697562 ggctcccagtgaagttactcctacaacttcgatgcgtctgtaagtcatggaattctctaatcactgataccagttttaccaagaagcaccttagcatgtc 2697463  T
Q  275 aacaacgc 282  Q
    ||| ||||    
T  2697462 aaccacgc 2697455  T

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Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 213 - 277
Target Start/End: Original strand, 988688 - 988752
Alignment:
Q  213 tgcaagtcatggaaatctctaatctccgatccaaaatttacaaaaaagcaccttcgcatgtcaac 277  Q
    |||||||||||||| ||| ||||||| ||||| |||||  |||||||||||||| || |||||||    
T  988688 tgcaagtcatggaattctttaatctctgatcccaaattcgcaaaaaagcaccttagcctgtcaac 988752  T

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Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 131 - 306
Target Start/End: Complemental strand, 9595456 - 9595281
Alignment:
Q  131 gcttccaactcttccattcgatgtgatctctgaaattctctgcaggcttccagtgaagctgctcctacaacttagttgcctctgcaagtcatggaaatct 230  Q
    ||||||||||||||| |||||| | ||  |||||||||| ||||||||||| |||||| | ||| | |||||| | ||| | || ||||  |   | |||    
T  9595456 gcttccaactcttcctttcgatctaattgctgaaattctatgcaggcttcctgtgaagtttctctttcaacttcgatgcgtatgtaagttctttcattct 9595357  T
Q  231 ctaatctccgatccaaaatttacaaaaaagcaccttcgcatgtcaacaacgctccaccacatcatggtaacctcta 306  Q
    || || || |||||||||||| |||| || |||||||   ||||||||| || ||||||| ||||| || ||||||    
T  9595356 cttatttctgatccaaaatttgcaaagaatcaccttcaattgtcaacaaagcgccaccacctcatgatagcctcta 9595281  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 131 - 187
Target Start/End: Complemental strand, 7325227 - 7325171
Alignment:
Q  131 gcttccaactcttccattcgatgtgatctctgaaattctctgcaggcttccagtgaa 187  Q
    ||||||||||||||| ||||||||  |  |||| ||||||||||||||||| |||||    
T  7325227 gcttccaactcttcctttcgatgtcttacctgagattctctgcaggcttcctgtgaa 7325171  T

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Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 234 - 306
Target Start/End: Complemental strand, 7334998 - 7334926
Alignment:
Q  234 atctccgatccaaaatttacaaaaaagcaccttcgcatgtcaacaacgctccaccacatcatggtaacctcta 306  Q
    ||||| |||||||||||  |||| ||||||||||   ||||||||| || ||||||| |||||||||| ||||    
T  7334998 atctctgatccaaaattcgcaaagaagcaccttcaattgtcaacaaagcgccaccacctcatggtaacatcta 7334926  T

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Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 131 - 219
Target Start/End: Complemental strand, 7443824 - 7443736
Alignment:
Q  131 gcttccaactcttccattcgatgtgatctctgaaattctctgcaggcttccagtgaagctgctcctacaacttagttgcctctgcaagt 219  Q
    |||||| |||||||| |||||| |  || |||| ||||||||||||||||| |||||  | ||| |||||||| | |||||||| ||||    
T  7443824 gcttcccactcttcccttcgatctcctccctgagattctctgcaggcttcctgtgaaattactcatacaacttcggtgcctctgtaagt 7443736  T

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Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 211 - 266
Target Start/End: Complemental strand, 9497245 - 9497189
Alignment:
Q  211 tctgcaagtcatgg-aaatctctaatctccgatccaaaatttacaaaaaagcacctt 266  Q
    |||||||||||||| |||||||| ||||||||||||||| || | || |||||||||    
T  9497245 tctgcaagtcatggtaaatctctcatctccgatccaaaaatttctaagaagcacctt 9497189  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 132 - 303
Target Start/End: Original strand, 27754859 - 27755030
Alignment:
Q  132 cttccaactcttccattcgatgtgatctctgaaattctctgcaggcttccagtgaagctgctcctacaacttagttgcctctgcaagtcatggaaatctc 231  Q
    ||||| |||||| |||||||| | |||   || ||||| |||| |||||| |||||| | || || |||||| | |||||||| ||||| |  || |||     
T  27754859 cttcccactcttacattcgatctcatcgaagagattctgtgcatgcttcccgtgaagttactacttcaactttgatgcctctgtaagtcctttaattctt 27754958  T
Q  232 taatctccgatccaaaatttacaaaaaagcaccttcgcatgtcaacaacgctccaccacatcatggtaacct 303  Q
    |||||||||||||||||||| | || || ||||||||| ||||||| || | |||| |  ||||||||||||    
T  27754959 taatctccgatccaaaatttgccaagaaacaccttcgcttgtcaaccacccgccacaatctcatggtaacct 27755030  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 228 - 290
Target Start/End: Original strand, 20305163 - 20305225
Alignment:
Q  228 tctctaatctccgatccaaaatttacaaaaaagcaccttcgcatgtcaacaacgctccaccac 290  Q
    ||||||||| ||||||| |||||  | || |||||||||||| ||||||||||||||||||||    
T  20305163 tctctaatcaccgatcccaaattcgccaagaagcaccttcgcttgtcaacaacgctccaccac 20305225  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 228 - 290
Target Start/End: Original strand, 20309567 - 20309629
Alignment:
Q  228 tctctaatctccgatccaaaatttacaaaaaagcaccttcgcatgtcaacaacgctccaccac 290  Q
    ||||||||| ||||||| |||||  | || |||||||||||| ||||||||||||||||||||    
T  20309567 tctctaatcaccgatcccaaattcgccaagaagcaccttcgcttgtcaacaacgctccaccac 20309629  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 162 - 288
Target Start/End: Complemental strand, 7169524 - 7169398
Alignment:
Q  162 gaaattctctgcaggcttccagtgaagctgctcctacaacttagttgcctctgcaagtcatggaaatctctaatctccgatccaaaatttacaaaaaagc 261  Q
    |||||||||| |||||||||||| ||| | ||| | |||||    | | |||| ||||| ||||||||||| ||||||||| |||||||  | || || |    
T  7169524 gaaattctctccaggcttccagtcaagtttctcatgcaactccaatccgtctgtaagtcctggaaatctcttatctccgattcaaaattcgctaagaatc 7169425  T
Q  262 accttcgcatgtcaacaacgctccacc 288  Q
    |||||||| ||||||| ||||||||||    
T  7169424 accttcgcttgtcaaccacgctccacc 7169398  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 162 - 277
Target Start/End: Complemental strand, 20020618 - 20020503
Alignment:
Q  162 gaaattctctgcaggcttccagtgaagctgctcctacaacttagttgcctctgcaagtcatggaaatctctaatctccgatccaaaatttacaaaaaagc 261  Q
    |||||||| || ||| | ||||||||||| ||||| |||||| | ||  | || || |||||||| ||||| |||||  |||| |||||| | || ||||    
T  20020618 gaaattctgtgtaggttaccagtgaagctcctccttcaacttcgatgtgtatgtaattcatggaattctctcatctctcatcctaaattttccaagaagc 20020519  T
Q  262 accttcgcatgtcaac 277  Q
    ||||||||||||||||    
T  20020518 accttcgcatgtcaac 20020503  T

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Target: scaffold0015 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 192 - 272
Target Start/End: Complemental strand, 41187 - 41103
Alignment:
Q  192 ctcctacaacttagttgcctctgcaagtcatggaaatctctaatctc---cgatccaaaattta-caaaaaagcaccttcgcatg 272  Q
    ||||||||| |  ||||| |||||||||||||||| |||||||||||    ||||| ||||||| ||||||| ||||||||||||    
T  41187 ctcctacaattccgttgcgtctgcaagtcatggaattctctaatctcaaatgatcctaaatttatcaaaaaaacaccttcgcatg 41103  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 135 - 277
Target Start/End: Complemental strand, 24418296 - 24418154
Alignment:
Q  135 ccaactcttccattcgatgtgatctctgaaattctctgcaggcttccagtgaagctgctcctacaacttagttgcctctgcaagtcatggaaatctctaa 234  Q
    ||||||||||| |||||| |  |  |||| ||||| || |||||||| |||||| | ||||| |||||| | || ||||||||||| |  || ||  |||    
T  24418296 ccaactcttcccttcgatcttgtagctgagattctgtgtaggcttcccgtgaagttactccttcaacttcgctgtctctgcaagtccttcaattcattaa 24418197  T
Q  235 tctccgatccaaaatttacaaaaaagcaccttcgcatgtcaac 277  Q
    |||| ||||| |||||  |||| |||||||||||| |||||||    
T  24418196 tctctgatcccaaattcgcaaacaagcaccttcgcttgtcaac 24418154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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