View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0768_low_4 (Length: 612)
Name: NF0768_low_4
Description: NF0768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0768_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 392; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 144 - 583
Target Start/End: Original strand, 31219494 - 31219932
Alignment:
| Q |
144 |
aactccttcaaagatttcaaattattttcaagtcccttattttgaacctttattctctcagacgtcattttttgagtcatttccatctccttcaaagatt |
243 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31219494 |
aactccttcaaagatttcaaattattttcaagtcccttattttgaacctttattctctcagacgtcattttttgagtcatttccatctccttcaaagatt |
31219593 |
T |
|
| Q |
244 |
ttaacatatttacaagtgccttgctttggaacctttattctctcagagatcatactcacaacttgctctttttcaacaactttgggttccctaaggttga |
343 |
Q |
| |
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|||||||||| |||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||| |||| |||||||||||||| |
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| T |
31219594 |
ttaacatatt-acaagtgccttgcttttgaacctttattctctcagagatcatcctcacaacttgctctttttcaacaaccttggtttccctaaggttga |
31219692 |
T |
|
| Q |
344 |
cttcagcttccctatactctaaggcttcctcctgtctcctaaacttcttaatgagggatttccgcttttgttccatttcaagctcaaaatacnnnnnnnn |
443 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31219693 |
cttcagcttccctatactctaaggcttcctcctgtctcctaaacttcttaatgagggatttccgcttttgttccatttcaagctcaaaatacattttttt |
31219792 |
T |
|
| Q |
444 |
ctcgtcaaaaagtttctgctgcaactgcaaccataattctttctctttcatctccagcattctctttacagaagaatccactttcttctcctttcgatct |
543 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31219793 |
ctcgtcaaaaagtttctgctgcaactgcaaccataattctttctctttcatctccagcattctctttacagaagaatccactttcttctcctttcgatct |
31219892 |
T |
|
| Q |
544 |
tggaatacaccctagaagaacaacgaatcattcatatcta |
583 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| |
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|
| T |
31219893 |
tggaatacaccctagaagaacaacgaatcattcatatcta |
31219932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 144 - 583
Target Start/End: Original strand, 31213739 - 31214177
Alignment:
| Q |
144 |
aactccttcaaagatttcaaattattttcaagtcccttattttgaacctttattctctcagacgtcattttttgagtcatttccatctccttcaaagatt |
243 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
31213739 |
aactccttcaaagatttcaaattattttcaagtcccttattttgaacctttattctctcagacgtcattttttgagtcatttccatctccttcaaagatt |
31213838 |
T |
|
| Q |
244 |
ttaacatatttacaagtgccttgctttggaacctttattctctcagagatcatactcacaacttgctctttttcaacaactttgggttccctaaggttga |
343 |
Q |
| |
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|||||||||| |||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||| |||| |||||||||||||| |
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| T |
31213839 |
ttaacatatt-acaagtgccttgcttttgaacctttattctctcagagatcatcctcacaacttgctctttttcaacaaccttggtttccctaaggttga |
31213937 |
T |
|
| Q |
344 |
cttcagcttccctatactctaaggcttcctcctgtctcctaaacttcttaatgagggatttccgcttttgttccatttcaagctcaaaatacnnnnnnnn |
443 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31213938 |
cttcagcttccctatactctaaggcttcctcctgtctcctaaacttcttaatgagggatttccgcttttgttccatttcaagctcaaaatacattttttt |
31214037 |
T |
|
| Q |
444 |
ctcgtcaaaaagtttctgctgcaactgcaaccataattctttctctttcatctccagcattctctttacagaagaatccactttcttctcctttcgatct |
543 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31214038 |
ctcgtcaaaaagtttctgctgcaactgcaaccataattctttctctttcatctccagcattctctttacagaagaatccactttcttctcctttcgatct |
31214137 |
T |
|
| Q |
544 |
tggaatacaccctagaagaacaacgaatcattcatatcta |
583 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||| |
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|
| T |
31214138 |
tggaatacacccaagaagaacaacgaatcattcatatcta |
31214177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 7 - 87
Target Start/End: Original strand, 31213602 - 31213682
Alignment:
| Q |
7 |
ggagcagagacacaggccttgcagaacagtttgagctagaaacgataacatttgaattctccaaactttctcgatcagcaa |
87 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31213602 |
ggagccgagacacaggccttgcagaacagtttgagctagaaacgataacatttgaattctccaaactttctcgatcagcaa |
31213682 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 7 - 87
Target Start/End: Original strand, 31219357 - 31219437
Alignment:
| Q |
7 |
ggagcagagacacaggccttgcagaacagtttgagctagaaacgataacatttgaattctccaaactttctcgatcagcaa |
87 |
Q |
| |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31219357 |
ggagccgagacacaggccttgcagaacagtttgagctagaaacgataacatttgaattctccaaactttctcgatcagcaa |
31219437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 299; Significance: 1e-168; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 230 - 583
Target Start/End: Complemental strand, 47895723 - 47895369
Alignment:
| Q |
230 |
ctccttcaaagattttaacatatttacaagtgccttgctttggaacctttattctctcagagatcatactcacaacttgctctttttcaacaactttggg |
329 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
47895723 |
ctccttcaaagattttaacatatttacaagtgccttgcttttgaaccttcattctctcagagatcatactcacaacttgctctttttcaacaatcttggt |
47895624 |
T |
|
| Q |
330 |
ttccctaaggttgacttcagcttccctatactctaaggcttcctcctgtctcctaaacttcttaatgagggatttccgcttttgttccatttcaagctca |
429 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47895623 |
ttccctaaggttgacttcagctttcctatactctaaggcttcctcctgtctcctaaacttcttaatgagggatttccgcttttgttccatttcaagctca |
47895524 |
T |
|
| Q |
430 |
aaatac-nnnnnnnnctcgtcaaaaagtttctgctgcaactgcaaccataattctttctctttcatctccagcattctctttacagaagaatccactttc |
528 |
Q |
| |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47895523 |
aaatacttttttttcctcgtcaaaaagtttctgctgcaactgcaaccataattctttctctttcatctccagcattctctttacagaagaatccactttc |
47895424 |
T |
|
| Q |
529 |
ttctcctttcgatcttggaatacaccctagaagaacaacgaatcattcatatcta |
583 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
47895423 |
ttctcctttcgatcttggaatacaccctagaagaacaacgaatcattcatatcta |
47895369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 7 - 87
Target Start/End: Complemental strand, 47895861 - 47895781
Alignment:
| Q |
7 |
ggagcagagacacaggccttgcagaacagtttgagctagaaacgataacatttgaattctccaaactttctcgatcagcaa |
87 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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|
| T |
47895861 |
ggagccgagacacaggccttgcagaacagtttgagctagaaatgataacatttgaattctccaaactttctcgatcagcaa |
47895781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 57; Significance: 2e-23; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 275 - 431
Target Start/End: Original strand, 4960014 - 4960170
Alignment:
| Q |
275 |
cctttattctctcagagatcatactcacaacttgctctttttcaacaactttgggttccctaaggttgacttcagcttccctatactctaaggcttcctc |
374 |
Q |
| |
|
|||||||||||||||| || |||||| | ||||||||| || |||| || | ||||||| |||||||||| |||||||||||| ||||||||||| |
|
|
| T |
4960014 |
cctttattctctcagacttcgtactcaaagcttgctcttcttttccaaccttcgtttccctatggttgacttcgatttccctatactccaaggcttcctc |
4960113 |
T |
|
| Q |
375 |
ctgtctcctaaacttcttaatgagggatttccgcttttgttccatttcaagctcaaa |
431 |
Q |
| |
|
|| || ||||||| || | ||||||||||||||||||||||||||||||||||| |
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|
| T |
4960114 |
cttgctgctaaactcctcagctagggatttccgcttttgttccatttcaagctcaaa |
4960170 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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