View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0768_low_41 (Length: 319)

Name: NF0768_low_41
Description: NF0768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0768_low_41
NF0768_low_41
[»] chr7 (4 HSPs)
chr7 (106-261)||(25602644-25602799)
chr7 (212-247)||(5658545-5658580)
chr7 (220-250)||(40200798-40200828)
chr7 (212-257)||(1553292-1553337)
[»] chr8 (4 HSPs)
chr8 (212-257)||(29550825-29550870)
chr8 (212-257)||(29549139-29549184)
chr8 (204-252)||(5962872-5962920)
chr8 (212-252)||(44615760-44615800)
[»] chr4 (1 HSPs)
chr4 (212-257)||(3039159-3039204)
[»] chr1 (2 HSPs)
chr1 (218-247)||(3229670-3229699)
chr1 (218-247)||(13763846-13763875)
[»] chr6 (1 HSPs)
chr6 (211-243)||(23587911-23587943)


Alignment Details
Target: chr7 (Bit Score: 144; Significance: 1e-75; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 106 - 261
Target Start/End: Complemental strand, 25602799 - 25602644
Alignment:
Q  106 tgaacagatgaataccgtctgaacattagtaacaataatattagaataaatttattagtaatgtgtattattattttaaagaatttagttgcaatttatt 205  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25602799 tgaacagatgaatatcgtctgaacattagtaacaataatattagaataaatttattagtaatgtgtattattattttaaagaatttagttgcaatttatt 25602700  T
Q  206 ttcgttaagtaatttagtggctgaagctcacacattttaaatatgaataagtcaag 261  Q
    |||||||||||||||||||| || ||||||||||||||||||||||||||||||||    
T  25602699 ttcgttaagtaatttagtggttggagctcacacattttaaatatgaataagtcaag 25602644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 212 - 247
Target Start/End: Original strand, 5658545 - 5658580
Alignment:
Q  212 aagtaatttagtggctgaagctcacacattttaaat 247  Q
    |||||||||||||||||||||||||| |||||||||    
T  5658545 aagtaatttagtggctgaagctcacatattttaaat 5658580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 220 - 250
Target Start/End: Complemental strand, 40200828 - 40200798
Alignment:
Q  220 tagtggctgaagctcacacattttaaatatg 250  Q
    |||||||||||||||||||||||||||||||    
T  40200828 tagtggctgaagctcacacattttaaatatg 40200798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 212 - 257
Target Start/End: Complemental strand, 1553337 - 1553292
Alignment:
Q  212 aagtaatttagtggctgaagctcacacattttaaatatgaataagt 257  Q
    |||||||||||||||| ||||||||||| ||||||| |||| ||||    
T  1553337 aagtaatttagtggctaaagctcacacaatttaaatgtgaaaaagt 1553292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 212 - 257
Target Start/End: Complemental strand, 29550870 - 29550825
Alignment:
Q  212 aagtaatttagtggctgaagctcacacattttaaatatgaataagt 257  Q
    ||||||||||||||||||||||| |||| |||||||||||| ||||    
T  29550870 aagtaatttagtggctgaagctcccacactttaaatatgaaaaagt 29550825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 212 - 257
Target Start/End: Complemental strand, 29549184 - 29549139
Alignment:
Q  212 aagtaatttagtggctgaagctcacacattttaaatatgaataagt 257  Q
    |||||| ||||||||||||| ||||||||||||||| || ||||||    
T  29549184 aagtaacttagtggctgaagttcacacattttaaatgtggataagt 29549139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 204 - 252
Target Start/End: Complemental strand, 5962920 - 5962872
Alignment:
Q  204 ttttcgttaagtaatttagtggctgaagctcacacattttaaatatgaa 252  Q
    |||| |||||||| | ||||||||||| |||||||||||||||| ||||    
T  5962920 tttttgttaagtagtctagtggctgaaactcacacattttaaatgtgaa 5962872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 212 - 252
Target Start/End: Complemental strand, 44615800 - 44615760
Alignment:
Q  212 aagtaatttagtggctgaagctcacacattttaaatatgaa 252  Q
    ||||| ||||||||||||| |||||||||||||||| ||||    
T  44615800 aagtagtttagtggctgaaactcacacattttaaatgtgaa 44615760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 212 - 257
Target Start/End: Original strand, 3039159 - 3039204
Alignment:
Q  212 aagtaatttagtggctgaagctcacacattttaaatatgaataagt 257  Q
    ||||| |||||||| |||||||||||||||||||||||||| ||||    
T  3039159 aagtagtttagtggttgaagctcacacattttaaatatgaagaagt 3039204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 218 - 247
Target Start/End: Original strand, 3229670 - 3229699
Alignment:
Q  218 tttagtggctgaagctcacacattttaaat 247  Q
    ||||||||||||||||||||||||||||||    
T  3229670 tttagtggctgaagctcacacattttaaat 3229699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 218 - 247
Target Start/End: Complemental strand, 13763875 - 13763846
Alignment:
Q  218 tttagtggctgaagctcacacattttaaat 247  Q
    ||||||||||||||||||||||||||||||    
T  13763875 tttagtggctgaagctcacacattttaaat 13763846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 211 - 243
Target Start/End: Complemental strand, 23587943 - 23587911
Alignment:
Q  211 taagtaatttagtggctgaagctcacacatttt 243  Q
    |||||||| ||||||||||||||||||||||||    
T  23587943 taagtaatctagtggctgaagctcacacatttt 23587911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 3294 times since January 2019
Visitors: 4812