View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0768_low_42 (Length: 317)
Name: NF0768_low_42
Description: NF0768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0768_low_42 |
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Alignment Details
Target: chr2 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 39 - 237
Target Start/End: Original strand, 39758508 - 39758706
Alignment:
| Q |
39 |
caatttccaaattactatcatgtgcacggctcgatttcgcgtgtgttctagaatggtttgagtctaaagcggaggagttgtatctttgcacggcttttcc |
138 |
Q |
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| T |
39758508 |
caatttccaaattaccatcatgtgcacggctcgatttcgcgtgtgttctagaatggtttgagtctaaagcggaggagttgtatctttgcacggattttcc |
39758607 |
T |
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| Q |
139 |
agcattggttcatgacaactctatagttctttccgcggcctcgagttgtcgcaaagtctcattcaccaaaggtcgagcctgaactgactctttgtgtcc |
237 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
39758608 |
agcattggttcatgacaactctatagttctttccgcggcctcgagttgtcgcaaagtctcattcaccaaaggtcgagcctgaactgactctttgcgtcc |
39758706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 163 - 232
Target Start/End: Original strand, 39764332 - 39764401
Alignment:
| Q |
163 |
agttctttccgcggcctcgagttgtcgcaaagtctcattcaccaaaggtcgagcctgaactgactctttg |
232 |
Q |
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|||||||| ||| ||||| ||||||||||||||||| |||||||||||| |||||||| |||||||||| |
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| T |
39764332 |
agttcttttcgctgcctcaagttgtcgcaaagtctcgttcaccaaaggttgagcctgatttgactctttg |
39764401 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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