View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0768_low_43 (Length: 316)
Name: NF0768_low_43
Description: NF0768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0768_low_43 |
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| [»] scaffold0003 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 146; Significance: 7e-77; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 146; E-Value: 7e-77
Query Start/End: Original strand, 79 - 232
Target Start/End: Original strand, 22709173 - 22709326
Alignment:
| Q |
79 |
gtacatggattgtcttatttatagatctcaattacactaactacttgactaaccaaatcttactacctgcttaacatttaaccaactttaattaccttaa |
178 |
Q |
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| T |
22709173 |
gtacatggatggtcttatttatagatctcaattacactaactacttgactaaccaaatcttactacctgcttaacatttaaccaactttaattaccttaa |
22709272 |
T |
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| Q |
179 |
ctaactccacctatcttccaactattttaacacatcccccctcaaactcaaggt |
232 |
Q |
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| T |
22709273 |
ttaactccacctatcttccaactattttaacacatcccccctcaaactcaaggt |
22709326 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 90 - 210
Target Start/End: Complemental strand, 23875111 - 23874990
Alignment:
| Q |
90 |
gtcttatttatagatctcaattacactaactacttgactaaccaaatcttactacctgcttaaca-tttaaccaactttaattaccttaactaactccac |
188 |
Q |
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| T |
23875111 |
gtcttatttatagatctcaattacaggaactatttgagtaaccaaatctaactacctacctaacattttaactaactctaactaccttaattaatttcac |
23875012 |
T |
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| Q |
189 |
ctatcttccaactattttaaca |
210 |
Q |
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| T |
23875011 |
ctttctttgaactattttaaca |
23874990 |
T |
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Target: scaffold0003 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 171 - 212
Target Start/End: Original strand, 236748 - 236789
Alignment:
| Q |
171 |
taccttaactaactccacctatcttccaactattttaacaca |
212 |
Q |
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| T |
236748 |
taccttaaataacttcacctatcttccaactattttaacaca |
236789 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000007; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 171 - 210
Target Start/End: Complemental strand, 48940658 - 48940619
Alignment:
| Q |
171 |
taccttaactaactccacctatcttccaactattttaaca |
210 |
Q |
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| T |
48940658 |
taccttaactaactccacataacttccaactattttaaca |
48940619 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 171 - 213
Target Start/End: Original strand, 16808830 - 16808872
Alignment:
| Q |
171 |
taccttaactaactccacctatcttccaactattttaacacat |
213 |
Q |
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| T |
16808830 |
taccttaactaactacacataacttccaactattttaacacat |
16808872 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 168 - 210
Target Start/End: Complemental strand, 51020612 - 51020570
Alignment:
| Q |
168 |
aattaccttaactaactccacctatcttccaactattttaaca |
210 |
Q |
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| T |
51020612 |
aattaccttaaccaactccacataacttccaactattttaaca |
51020570 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 173 - 210
Target Start/End: Complemental strand, 9415087 - 9415050
Alignment:
| Q |
173 |
ccttaactaactccacctatcttccaactattttaaca |
210 |
Q |
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| T |
9415087 |
ccttaactaactccacataacttccaactattttaaca |
9415050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 175 - 211
Target Start/End: Complemental strand, 30376260 - 30376224
Alignment:
| Q |
175 |
ttaactaactccacctatcttccaactattttaacac |
211 |
Q |
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| T |
30376260 |
ttaactaactccacataacttccaactattttaacac |
30376224 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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