View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0768_low_44 (Length: 311)
Name: NF0768_low_44
Description: NF0768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0768_low_44 |
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Alignment Details
Target: chr1 (Bit Score: 237; Significance: 1e-131; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 282
Target Start/End: Original strand, 40968003 - 40968284
Alignment:
| Q |
1 |
tctccaatatattgtgtggaattccatcctggatgatcggattgagtttgatctctctaattttctatctcattgtccacatcttgaggaatttgcttta |
100 |
Q |
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| T |
40968003 |
tctccactatattgtgtggaattctatcctggatgatcggattgagtttgatctctctaattttctatctcattgtccacatcttgaggaatttgcttta |
40968102 |
T |
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| Q |
101 |
catgactgcttcaaacaacccatcaatattgtctctcttaactcattgaagagattataccnnnnnnnaaagatgcctctccctgattttgacatttgtc |
200 |
Q |
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|| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||| |
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| T |
40968103 |
cacgactgcttcaaacagcccatcaatattgtctctcttaactcattgaagagattatacctttttttagagatgcctctccctgattttgacatttgtc |
40968202 |
T |
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| Q |
201 |
cactgcaaattaatgccccttcgcttgaagatctttgtgttgtggatatttcattgactcccagaaaatatgagcttataaa |
282 |
Q |
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| T |
40968203 |
cagtgcaaattaatgccccttcgcttgaagatctttgtgttgtggatatttcattgactcccagaaaatatgagcttataaa |
40968284 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 43 - 106
Target Start/End: Original strand, 40978575 - 40978638
Alignment:
| Q |
43 |
tgagtttgatctctctaattttctatctcattgtccacatcttgaggaatttgctttacatgac |
106 |
Q |
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| T |
40978575 |
tgagtatgatcttgctaattttctatctcattgtccacatcttgaggaatttgttttacatgac |
40978638 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 193 - 274
Target Start/End: Original strand, 14267163 - 14267244
Alignment:
| Q |
193 |
catttgtccactgcaaattaatgccccttcgcttgaagatctttgtgttgtggatatttcattgactcccagaaaatatgag |
274 |
Q |
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| T |
14267163 |
catttatccactacaaattaatgccccgtcacttgaagttcttactattatggatttttcattgagtccaaggaaatatgag |
14267244 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000007; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 194 - 274
Target Start/End: Complemental strand, 20462296 - 20462216
Alignment:
| Q |
194 |
atttgtccactgcaaattaatgccccttcgcttgaagatctttgtgttgtggatatttcattgactcccagaaaatatgag |
274 |
Q |
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||||||||| | |||||||||||||| || ||||||| ||||| | || | ||| ||||||||||||| |||||||||||| |
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| T |
20462296 |
atttgtccagtacaaattaatgccccgtcacttgaagttctttctattattgatttttcattgactcctagaaaatatgag |
20462216 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 199 - 273
Target Start/End: Complemental strand, 20450668 - 20450594
Alignment:
| Q |
199 |
tccactgcaaattaatgccccttcgcttgaagatctttgtgttgtggatatttcattgactcccagaaaatatga |
273 |
Q |
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| T |
20450668 |
tccactacaaattaatgccccgtcacttgaagttctttatcttgttgatttttcattggctcctagaaaatatga |
20450594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 196 - 273
Target Start/End: Complemental strand, 20431497 - 20431420
Alignment:
| Q |
196 |
ttgtccactgcaaattaatgccccttcgcttgaagatctttgtgttgtggatatttcattgactcccagaaaatatga |
273 |
Q |
| |
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||||||||| |||||||||||||| || ||||||| |||| ||| | ||| ||||||||||||| ||||||||||| |
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| T |
20431497 |
ttgtccactacaaattaatgccccgtcacttgaagttcttcatgtaggtgatgtttcattgactcctagaaaatatga |
20431420 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 196 - 273
Target Start/End: Complemental strand, 20278930 - 20278853
Alignment:
| Q |
196 |
ttgtccactgcaaattaatgccccttcgcttgaagatctttgtgttgtggatatttcattgactcccagaaaatatga |
273 |
Q |
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||||||||| |||||||||||||| || ||||||| ||||| |||| ||| ||||||| |||| ||||||||||| |
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| T |
20278930 |
ttgtccactacaaattaatgccccgtcacttgaagttctttcaattgttgattcttcattggctcctagaaaatatga |
20278853 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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