View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0768_low_52 (Length: 278)
Name: NF0768_low_52
Description: NF0768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0768_low_52 |
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Alignment Details
Target: chr5 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 12 - 250
Target Start/End: Complemental strand, 36388338 - 36388096
Alignment:
| Q |
12 |
ataggtagacacccatctttccatttaatacctaatgtgctcccacatgtctctccatagtccaaaatggaatatgagtagaaataagagcgaaagttta |
111 |
Q |
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| T |
36388338 |
ataggtagacacccatctttccatttaatacctaatgtgctcccacatgtctctccatagtccaaaatggaatatgagtagaaataagagagaaagttta |
36388239 |
T |
|
| Q |
112 |
catccaatcaagcttt----catatgaatgttaattggatgtacaaaaattaaaggatgtttatcaatcttcactctatcctatatagcatattcaccaa |
207 |
Q |
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||||||||||| |||| |||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
36388238 |
catccaatcaacctttgactcatatgaatgttaattagatgtacataaattaaaggatgtttatcaatcttcactctatcctagatagcatattcaccaa |
36388139 |
T |
|
| Q |
208 |
gtaattaaggttttgaaacttcagatttttatgggcatatgtt |
250 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||| |
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| T |
36388138 |
gtaattaaggttttaaaacttcagatttttatgggcatatgtt |
36388096 |
T |
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