View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0768_low_56 (Length: 272)
Name: NF0768_low_56
Description: NF0768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0768_low_56 |
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Alignment Details
Target: chr1 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 8 - 243
Target Start/End: Complemental strand, 6695731 - 6695492
Alignment:
| Q |
8 |
ccaacaatatgactgaatgcattatgtagaaacatacgaggtcagtttgcatccccacaccatgtgtaccacccattttgaatttgatccctttccatgt |
107 |
Q |
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| T |
6695731 |
ccaacaatatgtctgaatgcattatgtagaaacatacgaggtcagtttgcatccccacaccatgtgtaccacccattttgaatttggtccctttccatgt |
6695632 |
T |
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| Q |
108 |
gtcaagttgttgaacttgtcctttccggtgg----ggtcatgctactcatagcattctctttatccnnnnnnnnntaatttccttcaaatgtgggcacat |
203 |
Q |
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| T |
6695631 |
gtcaagttgttgaacttgtcctttccggtggggtcggtcatgctactcatagcattctctttatccaaaaaaaaataatttccttcaaatgtgggcacat |
6695532 |
T |
|
| Q |
204 |
tcataactaacctccacatcttgcagaagcaattgggatg |
243 |
Q |
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| T |
6695531 |
tcataactaacctccacatcttgcagaagcaattgggatg |
6695492 |
T |
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