View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0768_low_60 (Length: 260)
Name: NF0768_low_60
Description: NF0768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0768_low_60 |
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Alignment Details
Target: chr5 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 33 - 244
Target Start/End: Complemental strand, 8174146 - 8173931
Alignment:
| Q |
33 |
acatcatcatcatgtgagtttgtgtttcaattcattcattcattca----cagtttaaggatatggcttcagctttatcctctatcatcaaccaacctca |
128 |
Q |
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| T |
8174146 |
acatcatcatcatgtgagtttgtgtttcaattcattcattcattcattcacagtttaaggatatggcttcagctttatcctctatcatcaaccaacctca |
8174047 |
T |
|
| Q |
129 |
cactgctcaacgccttaaacttcattctccatcttgtctcagattcttcagacacaaacactatgcttttctcccttctcccaaaccattttcatcttca |
228 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8174046 |
cactgctcaacgccttaaacttcattctccatcttgtctcagattcttcaaacacaaacactatgcttttctcccttctcccaaaccattttcatcttca |
8173947 |
T |
|
| Q |
229 |
cgtccttttcatctca |
244 |
Q |
| |
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|||||| ||||||||| |
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| T |
8173946 |
cgtcctcttcatctca |
8173931 |
T |
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