View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0768_low_61 (Length: 260)
Name: NF0768_low_61
Description: NF0768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0768_low_61 |
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Alignment Details
Target: chr4 (Bit Score: 119; Significance: 7e-61; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 131 - 253
Target Start/End: Complemental strand, 40747109 - 40746987
Alignment:
| Q |
131 |
tttcctatttcctgcaaacgattaaacacataatttctctaagagatagaaaagcattgttttgagtagtttatctcaataatttccaagaaatacttga |
230 |
Q |
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| T |
40747109 |
tttcctatttcctgcaaacgattaaacacataatttctctaagagatagaaaagcattgttttgagtagtttatctcaataatttccaagaaatacttga |
40747010 |
T |
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| Q |
231 |
gttccttgagatccttcatctca |
253 |
Q |
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|||||| |||||||||||||||| |
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| T |
40747009 |
gttcctcgagatccttcatctca |
40746987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 1 - 131
Target Start/End: Complemental strand, 40747434 - 40747304
Alignment:
| Q |
1 |
gaaggtacaatatcctgaagtaaatcctttatctctcgttgaacctgcataatcaatatcaatgtaagcctccctaattaagttttcacctcttttaaac |
100 |
Q |
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|||||||||||||||| ||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||| |
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| T |
40747434 |
gaaggtacaatatcctaaagtaaatcctttatatctcgttgaacctgcataatcaacatcaatgtaagcctccctaattaagtttccacctcttttaaac |
40747335 |
T |
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| Q |
101 |
aatactattatctctggactggctttgagat |
131 |
Q |
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||||||||| ||||||||||||||||||||| |
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| T |
40747334 |
aatactattctctctggactggctttgagat |
40747304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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