View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0768_low_67 (Length: 251)
Name: NF0768_low_67
Description: NF0768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0768_low_67 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 14 - 251
Target Start/End: Complemental strand, 34986162 - 34985925
Alignment:
| Q |
14 |
atataacttaaggtaattaaaacatcaaaactgaactattatactccagtttttgtttataatcaaaactaaaaggagtatatgtatgtatcgaaccttg |
113 |
Q |
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| T |
34986162 |
atataacctaaggtaattaaaacatcaaaactgaactattatactccattttttgtttataatcaaaactaaaagcagtatatgtatgtatcaaaccttg |
34986063 |
T |
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| Q |
114 |
gagtttccatcgggcattccttcaatcaaacagcctgaaggtctcttatgaaaattgtttgaaggagattgtaaaatgtcctccaaagatacatcaacaa |
213 |
Q |
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| T |
34986062 |
gagtttccatcgggcattccttcaatcaaacagccagaaggtcttttatgaaaattgttagaaggagattgtaaaatgtcctccaaagatacatcaacaa |
34985963 |
T |
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| Q |
214 |
cagcccatatgttatgagtgaattgtttgctatatctt |
251 |
Q |
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| T |
34985962 |
cagcccatatgttatgagtgaattgtttgctatatctt |
34985925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 65 - 251
Target Start/End: Complemental strand, 34994475 - 34994289
Alignment:
| Q |
65 |
tttgtttataatcaaaactaaaaggagtatatgtatgtatcgaaccttggagtttccatcgggcattccttcaatcaaacagcctgaaggtctcttatga |
164 |
Q |
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|||| |||||| |||| |||| |||||||||||||||| |||||||||||||||||| |||||||||| ||||||||||||||||||||| |||||| |
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| T |
34994475 |
tttgcttataaagaaaattaaagggagtatatgtatgtaaagaaccttggagtttccattgggcattcctataatcaaacagcctgaaggtcttttatga |
34994376 |
T |
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| Q |
165 |
aaattgtttgaaggagattgtaaaatgtcctccaaagatacatcaacaacagcccatatgttatgagtgaattgtttgctatatctt |
251 |
Q |
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| T |
34994375 |
aaattgtttgagaaagaaggtaaaatgtcctccaaagatacatcaacaacagcccatatgttatgagtaaattgtttgctatatctt |
34994289 |
T |
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