View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0768_low_68 (Length: 251)
Name: NF0768_low_68
Description: NF0768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0768_low_68 |
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Alignment Details
Target: chr1 (Bit Score: 89; Significance: 5e-43; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 46842411 - 46842499
Alignment:
| Q |
1 |
ttgtagtaaccttagtaaaaactgccattgttgctgagatcatggtggtgtggccttattaaaaccactcaatgattcacctgaaacaa |
89 |
Q |
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| T |
46842411 |
ttgtagtaaccttagtaaaaactgccattgttgctgagatcatggtggtgtggccttattaaaaccactcaatgattcacctgaaacaa |
46842499 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 136 - 242
Target Start/End: Original strand, 46842547 - 46842660
Alignment:
| Q |
136 |
ccaccaattctcaatcattaacacgtagtacaaagtttttataagnnnnnnnnnn-------cccaccaaccagttactccaatcacaaaccactttctt |
228 |
Q |
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| T |
46842547 |
ccaccaattctcaatcattaacacgtagtacaaagtttttataagaaaaaaaaaaaaaaaaacccaccaaccaattactccaatcacaaaccactttctt |
46842646 |
T |
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| Q |
229 |
ctttctttctctgc |
242 |
Q |
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| T |
46842647 |
ctttctttctctgc |
46842660 |
T |
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