View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0768_low_71 (Length: 250)
Name: NF0768_low_71
Description: NF0768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0768_low_71 |
 | |
|
| [»] chr7 (1 HSPs) |
| |
|
| [»] chr8 (1 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 16 - 250
Target Start/End: Original strand, 8337989 - 8338224
Alignment:
| Q |
16 |
atgtgtattgatatattttcccaccaaatagttgtcaataaagttcagttgttgtaaccagttaaagttagatatatcagtgttaagtttgaactaatgg |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8337989 |
atgtgtattgatatattttcccaccaaatagttgtcaataaagttcagttgttgtaaccagttaaagttagatatatcagtgttaagtttgaactaatgg |
8338088 |
T |
|
| Q |
116 |
taactaataaagttacattacacaattggtccaaactaatggtaagttagtt-nnnnnnnnnttatttagacaacttttacccattaatgaaggacgtgg |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
8338089 |
taactaataaagttacattacacaattggtccaaactaatggtaagttagttaaaaaaaaaattatttagacaacttttatccattaatgaaggacgtgg |
8338188 |
T |
|
| Q |
215 |
cagaaaaatagcttagggcctaagtgggttttccac |
250 |
Q |
| |
|
|||||||| ||| |||||| |||||||||||||||| |
|
|
| T |
8338189 |
cagaaaaagagcctagggcataagtgggttttccac |
8338224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 169; Significance: 1e-90; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 16 - 250
Target Start/End: Original strand, 10235269 - 10235505
Alignment:
| Q |
16 |
atgtgtattgatatattttcccaccaaatagttgtcaataaagttcagttgttgtaaccagttaaagttagatatatcagtgttaagtttgaactaatgg |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
10235269 |
atgtgtattgatatattttcccaccaaatagttgtcaataaagttcagttgttgtaaccaattaaagttagatatat-agtgttaagtttgaactaatgg |
10235367 |
T |
|
| Q |
116 |
taactaataaagttacattacacaattggtccaaactaatggtaagttagtt---nnnnnnnnnttatttagacaacttttacccattaatgaaggacgt |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
10235368 |
taactaataaagttacattacacaattggtccaaactaatggtaagttagttaaaaaaaaaaaaaaatttagacaacttttacccattaatgaaggacgt |
10235467 |
T |
|
| Q |
213 |
ggcagaaaaatagcttagggcctaagtgggttttccac |
250 |
Q |
| |
|
|||||||||| |||||||||| |||||||||||||||| |
|
|
| T |
10235468 |
ggcagaaaaagagcttagggcataagtgggttttccac |
10235505 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 4311 times since January 2019
Visitors: 4832