View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0768_low_72 (Length: 249)

Name: NF0768_low_72
Description: NF0768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0768_low_72
NF0768_low_72
[»] chr4 (10 HSPs)
chr4 (89-160)||(26444584-26444655)
chr4 (89-160)||(46739871-46739942)
chr4 (90-160)||(35659455-35659525)
chr4 (91-160)||(19567235-19567304)
chr4 (90-157)||(12622069-12622136)
chr4 (110-160)||(12622166-12622216)
chr4 (90-160)||(16027372-16027442)
chr4 (90-160)||(35659355-35659425)
chr4 (110-160)||(44024856-44024906)
chr4 (110-142)||(3484485-3484517)
[»] chr2 (9 HSPs)
chr2 (88-187)||(21317011-21317110)
chr2 (89-187)||(21337002-21337100)
chr2 (89-160)||(1385016-1385087)
chr2 (90-160)||(1385117-1385187)
chr2 (110-160)||(10744580-10744630)
chr2 (90-144)||(21367510-21367564)
chr2 (3-48)||(1385016-1385061)
chr2 (46-91)||(1385016-1385061)
chr2 (110-142)||(32215770-32215802)
[»] chr3 (10 HSPs)
chr3 (90-187)||(17206804-17206901)
chr3 (89-160)||(17206740-17206811)
chr3 (90-160)||(24545350-24545420)
chr3 (90-160)||(24549327-24549397)
chr3 (90-160)||(24553953-24554023)
chr3 (90-160)||(24557012-24557082)
chr3 (93-156)||(54331675-54331738)
chr3 (110-160)||(11191225-11191275)
chr3 (114-160)||(12860502-12860548)
chr3 (110-160)||(16180665-16180715)
[»] scaffold1256 (2 HSPs)
scaffold1256 (88-160)||(579-651)
scaffold1256 (90-160)||(681-751)
[»] chr6 (8 HSPs)
chr6 (90-160)||(23492817-23492887)
chr6 (90-160)||(23498415-23498485)
chr6 (91-160)||(19958208-19958277)
chr6 (89-160)||(22555875-22555946)
chr6 (110-160)||(23492734-23492784)
chr6 (110-160)||(23498332-23498382)
chr6 (110-142)||(23991898-23991930)
chr6 (110-142)||(34962761-34962793)
[»] chr1 (8 HSPs)
chr1 (90-160)||(44891318-44891388)
chr1 (90-160)||(17904357-17904427)
chr1 (90-160)||(24721121-24721191)
chr1 (90-160)||(45473852-45473922)
chr1 (113-160)||(6832986-6833033)
chr1 (89-160)||(44891227-44891298)
chr1 (125-161)||(12709839-12709875)
chr1 (110-142)||(14239064-14239096)
[»] chr5 (7 HSPs)
chr5 (92-164)||(26646366-26646438)
chr5 (89-160)||(6551786-6551857)
chr5 (93-160)||(6551916-6551983)
chr5 (90-161)||(12354851-12354922)
chr5 (110-160)||(14027168-14027218)
chr5 (96-151)||(8834459-8834514)
chr5 (110-160)||(8505025-8505075)
[»] scaffold0231 (1 HSPs)
scaffold0231 (89-160)||(19129-19200)
[»] scaffold0063 (1 HSPs)
scaffold0063 (89-160)||(61447-61518)
[»] scaffold0011 (2 HSPs)
scaffold0011 (90-160)||(39599-39669)
scaffold0011 (90-160)||(39499-39569)
[»] scaffold0108 (1 HSPs)
scaffold0108 (90-160)||(8221-8291)
[»] chr8 (10 HSPs)
chr8 (90-160)||(2718068-2718138)
chr8 (90-160)||(36733872-36733942)
chr8 (90-161)||(22473109-22473180)
chr8 (90-160)||(22473210-22473280)
chr8 (96-160)||(6574350-6574414)
chr8 (93-160)||(18820422-18820489)
chr8 (89-160)||(36406297-36406368)
chr8 (110-160)||(18820339-18820389)
chr8 (110-142)||(16414120-16414152)
chr8 (110-142)||(32121123-32121155)
[»] chr7 (7 HSPs)
chr7 (89-160)||(9744447-9744518)
chr7 (90-160)||(9744357-9744427)
chr7 (90-160)||(15577259-15577329)
chr7 (110-160)||(13134276-13134326)
chr7 (114-159)||(20253970-20254015)
chr7 (4-47)||(9744357-9744400)
chr7 (47-90)||(9744357-9744400)
[»] scaffold0453 (1 HSPs)
scaffold0453 (114-160)||(6012-6058)
[»] scaffold0213 (1 HSPs)
scaffold0213 (90-160)||(17854-17924)
[»] scaffold0628 (1 HSPs)
scaffold0628 (93-160)||(4850-4918)
[»] scaffold0113 (1 HSPs)
scaffold0113 (110-161)||(33543-33594)
[»] scaffold0439 (1 HSPs)
scaffold0439 (111-160)||(3135-3184)
[»] scaffold0716 (1 HSPs)
scaffold0716 (110-142)||(4090-4122)
[»] scaffold0054 (1 HSPs)
scaffold0054 (110-162)||(66627-66679)
[»] scaffold0023 (1 HSPs)
scaffold0023 (110-142)||(18433-18465)


Alignment Details
Target: chr4 (Bit Score: 60; Significance: 1e-25; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 89 - 160
Target Start/End: Complemental strand, 26444655 - 26444584
Alignment:
Q  89 ttgttgtttatgtaaagtatcgttaatgatgatttgaagttgattgatgatttataattggaactatgtgaa 160  Q
    ||||||||||||| ||| || |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26444655 ttgttgtttatgtgaagcattgttaatgatgatttgaagttgattgatgatttataattggaactatgtgaa 26444584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 89 - 160
Target Start/End: Complemental strand, 46739942 - 46739871
Alignment:
Q  89 ttgttgtttatgtaaagtatcgttaatgatgatttgaagttgattgatgatttataattggaactatgtgaa 160  Q
    ||||||||||||| ||  || | ||||||||||||||||||||||||||||||||| |||||||||||||||    
T  46739942 ttgttgtttatgtgaaacattggtaatgatgatttgaagttgattgatgatttatagttggaactatgtgaa 46739871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 90 - 160
Target Start/End: Complemental strand, 35659525 - 35659455
Alignment:
Q  90 tgttgtttatgtaaagtatcgttaatgatgatttgaagttgattgatgatttataattggaactatgtgaa 160  Q
    |||||||||||| ||| || |||||||||||||||||||||| |||||||||||| |||||| ||||||||    
T  35659525 tgttgtttatgtgaagcattgttaatgatgatttgaagttgaatgatgatttatagttggaagtatgtgaa 35659455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 91 - 160
Target Start/End: Original strand, 19567235 - 19567304
Alignment:
Q  91 gttgtttatgtaaagtatcgttaatgatgatttgaagttgattgatgatttataattggaactatgtgaa 160  Q
    ||||||||||| ||| || |||||||||||||||||||| |||||||||||||| |||||| ||||||||    
T  19567235 gttgtttatgtgaagcattgttaatgatgatttgaagttaattgatgatttatagttggaattatgtgaa 19567304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 90 - 157
Target Start/End: Complemental strand, 12622136 - 12622069
Alignment:
Q  90 tgttgtttatgtaaagtatcgttaatgatgatttgaagttgattgatgatttataattggaactatgt 157  Q
    |||||||||||| ||| || |||||||||||||||||||| |||||||||||||| |||||| |||||    
T  12622136 tgttgtttatgtgaagcattgttaatgatgatttgaagttaattgatgatttatagttggaattatgt 12622069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 110 - 160
Target Start/End: Complemental strand, 12622216 - 12622166
Alignment:
Q  110 gttaatgatgatttgaagttgattgatgatttataattggaactatgtgaa 160  Q
    |||||||||||||||||||| |||||||||||||| |||||| ||||||||    
T  12622216 gttaatgatgatttgaagttaattgatgatttatagttggaattatgtgaa 12622166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 90 - 160
Target Start/End: Original strand, 16027372 - 16027442
Alignment:
Q  90 tgttgtttatgtaaagtatcgttaatgatgatttgaagttgattgatgatttataattggaactatgtgaa 160  Q
    |||||||||||| ||| |  ||||||||||||||||||||   |||||||||||| |||||| ||||||||    
T  16027372 tgttgtttatgtgaagcaatgttaatgatgatttgaagttagctgatgatttatagttggaattatgtgaa 16027442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 90 - 160
Target Start/End: Complemental strand, 35659425 - 35659355
Alignment:
Q  90 tgttgtttatgtaaagtatcgttaatgatgatttgaagttgattgatgatttataattggaactatgtgaa 160  Q
    |||||||||||| ||| || || ||||||||||||||||||| | |||||||||| | | |||||||||||    
T  35659425 tgttgtttatgtgaagcattgtaaatgatgatttgaagttgaataatgatttatagtcgaaactatgtgaa 35659355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 110 - 160
Target Start/End: Original strand, 44024856 - 44024906
Alignment:
Q  110 gttaatgatgatttgaagttgattgatgatttataattggaactatgtgaa 160  Q
    |||||||||||||||||||| ||||||||| |||| |||||| ||||||||    
T  44024856 gttaatgatgatttgaagttaattgatgatgtatagttggaattatgtgaa 44024906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 110 - 142
Target Start/End: Complemental strand, 3484517 - 3484485
Alignment:
Q  110 gttaatgatgatttgaagttgattgatgattta 142  Q
    ||||||||||||| |||||||||||||||||||    
T  3484517 gttaatgatgattagaagttgattgatgattta 3484485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 60; Significance: 1e-25; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 88 - 187
Target Start/End: Original strand, 21317011 - 21317110
Alignment:
Q  88 attgttgtttatgtaaagtatcgttaatgatgatttgaagttgattgatgatttataattggaactatgtgaaatatatgtattactaattgatgttgtt 187  Q
    |||||||||||||| ||| || ||| ||||||||||||||||||||||||||||||||||||||||||||||| |||   ||||||| |||| |||||||    
T  21317011 attgttgtttatgtgaagcattgttgatgatgatttgaagttgattgatgatttataattggaactatgtgaagtatcaatattacttattgctgttgtt 21317110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 89 - 187
Target Start/End: Original strand, 21337002 - 21337100
Alignment:
Q  89 ttgttgtttatgtaaagtatcgttaatgatgatttgaagttgattgatgatttataattggaactatgtgaaatatatgtattactaattgatgttgtt 187  Q
    ||||||||||||| ||| || ||| ||||||||||||||||||||||||||||||||||||||||||||||| |||   ||||||| |||| |||||||    
T  21337002 ttgttgtttatgtgaagcattgttgatgatgatttgaagttgattgatgatttataattggaactatgtgaagtatcaatattacttattgttgttgtt 21337100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 89 - 160
Target Start/End: Original strand, 1385016 - 1385087
Alignment:
Q  89 ttgttgtttatgtaaagtatcgttaatgatgatttgaagttgattgatgatttataattggaactatgtgaa 160  Q
    ||||||||||||| ||| |||||||||||||||||||||||||||||| ||||||| ||| |||||||||||    
T  1385016 ttgttgtttatgtgaagcatcgttaatgatgatttgaagttgattgataatttatagttgaaactatgtgaa 1385087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 90 - 160
Target Start/End: Original strand, 1385117 - 1385187
Alignment:
Q  90 tgttgtttatgtaaagtatcgttaatgatgatttgaagttgattgatgatttataattggaactatgtgaa 160  Q
    |||||||||||| ||| ||||||||||||||||||||||| |||||| ||||||| |||||||||||||||    
T  1385117 tgttgtttatgtgaagcatcgttaatgatgatttgaagttaattgataatttatagttggaactatgtgaa 1385187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 110 - 160
Target Start/End: Original strand, 10744580 - 10744630
Alignment:
Q  110 gttaatgatgatttgaagttgattgatgatttataattggaactatgtgaa 160  Q
    |||||||||||||||||||| ||||||||| |||| |||||| ||||||||    
T  10744580 gttaatgatgatttgaagttaattgatgatgtatagttggaattatgtgaa 10744630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 90 - 144
Target Start/End: Complemental strand, 21367564 - 21367510
Alignment:
Q  90 tgttgtttatgtaaagtatcgttaatgatgatttgaagttgattgatgatttata 144  Q
    |||| ||||||| ||| || ||| |||||||||||||||||||||||||||||||    
T  21367564 tgttatttatgtgaagcattgttgatgatgatttgaagttgattgatgatttata 21367510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 48
Target Start/End: Original strand, 1385016 - 1385061
Alignment:
Q  3 ttgttgtttatgtgaagtatcactaaagatgatttgaagttgattg 48  Q
    ||||||||||||||||| |||  ||| |||||||||||||||||||    
T  1385016 ttgttgtttatgtgaagcatcgttaatgatgatttgaagttgattg 1385061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 46 - 91
Target Start/End: Original strand, 1385016 - 1385061
Alignment:
Q  46 ttgttgtttatgtgaagtatcactaaagatgatttgaagttgattg 91  Q
    ||||||||||||||||| |||  ||| |||||||||||||||||||    
T  1385016 ttgttgtttatgtgaagcatcgttaatgatgatttgaagttgattg 1385061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 110 - 142
Target Start/End: Original strand, 32215770 - 32215802
Alignment:
Q  110 gttaatgatgatttgaagttgattgatgattta 142  Q
    ||||||||||||| |||||||||||||||||||    
T  32215770 gttaatgatgattagaagttgattgatgattta 32215802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 58; Significance: 2e-24; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 90 - 187
Target Start/End: Complemental strand, 17206901 - 17206804
Alignment:
Q  90 tgttgtttatgtaaagtatcgttaatgatgatttgaagttgattgatgatttataattggaactatgtgaaatatatgtattactaattgatgttgtt 187  Q
    |||||||||||| ||| || ||||||||||||||||||||||||||||||||||| ||||||||||||||| |||   ||||| |||||| |||||||    
T  17206901 tgttgtttatgtgaagcatggttaatgatgatttgaagttgattgatgatttatagttggaactatgtgaagtatcaatattattaattgttgttgtt 17206804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 89 - 160
Target Start/End: Complemental strand, 17206811 - 17206740
Alignment:
Q  89 ttgttgtttatgtaaagtatcgttaatgatgatttgaagttgattgatgatttataattggaactatgtgaa 160  Q
    ||||||||||||| ||| || || |||||||||||||||||||||||||||||||| ||||| |||||||||    
T  17206811 ttgttgtttatgtgaagcatggtgaatgatgatttgaagttgattgatgatttatagttggagctatgtgaa 17206740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 90 - 160
Target Start/End: Complemental strand, 24545420 - 24545350
Alignment:
Q  90 tgttgtttatgtaaagtatcgttaatgatgatttgaagttgattgatgatttataattggaactatgtgaa 160  Q
    |||||||||| | ||| || |||||||||||||||||||||||| |||||||||| |||||||||||||||    
T  24545420 tgttgtttatatgaagcattgttaatgatgatttgaagttgatttatgatttatagttggaactatgtgaa 24545350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 90 - 160
Target Start/End: Original strand, 24549327 - 24549397
Alignment:
Q  90 tgttgtttatgtaaagtatcgttaatgatgatttgaagttgattgatgatttataattggaactatgtgaa 160  Q
    |||||||||| | ||| || |||||||| |||||||||||||||||||||||||| |||||||||||||||    
T  24549327 tgttgtttatatgaagcattgttaatgacgatttgaagttgattgatgatttatagttggaactatgtgaa 24549397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 90 - 160
Target Start/End: Original strand, 24553953 - 24554023
Alignment:
Q  90 tgttgtttatgtaaagtatcgttaatgatgatttgaagttgattgatgatttataattggaactatgtgaa 160  Q
    |||||||||| | ||| || |||||||| |||||||||||||||||||||||||| |||||||||||||||    
T  24553953 tgttgtttatatgaagcattgttaatgacgatttgaagttgattgatgatttatagttggaactatgtgaa 24554023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 90 - 160
Target Start/End: Original strand, 24557012 - 24557082
Alignment:
Q  90 tgttgtttatgtaaagtatcgttaatgatgatttgaagttgattgatgatttataattggaactatgtgaa 160  Q
    |||||||||| | ||| || |||||||| |||||||||||||||||||||||||| |||||||||||||||    
T  24557012 tgttgtttatatgaagcattgttaatgacgatttgaagttgattgatgatttatagttggaactatgtgaa 24557082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 93 - 156
Target Start/End: Original strand, 54331675 - 54331738
Alignment:
Q  93 tgtttatgtaaagtatcgttaatgatgatttgaagttgattgatgatttataattggaactatg 156  Q
    ||||||||| ||| || |||||||||||||||||||||| |||||||||||| |||||||||||    
T  54331675 tgtttatgtgaagcatggttaatgatgatttgaagttgaatgatgatttatagttggaactatg 54331738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 110 - 160
Target Start/End: Complemental strand, 11191275 - 11191225
Alignment:
Q  110 gttaatgatgatttgaagttgattgatgatttataattggaactatgtgaa 160  Q
    |||||||||||||||||||| ||||||||| |||| |||||| ||||||||    
T  11191275 gttaatgatgatttgaagttaattgatgatgtatagttggaattatgtgaa 11191225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 114 - 160
Target Start/End: Original strand, 12860502 - 12860548
Alignment:
Q  114 atgatgatttgaagttgattgatgatttataattggaactatgtgaa 160  Q
    ||||||||||||||||||||||||||||||| ||| || ||||||||    
T  12860502 atgatgatttgaagttgattgatgatttatagttgaaattatgtgaa 12860548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 110 - 160
Target Start/End: Original strand, 16180665 - 16180715
Alignment:
Q  110 gttaatgatgatttgaagttgattgatgatttataattggaactatgtgaa 160  Q
    |||||||||||||||||||| ||||||||| |||| |||||| ||||||||    
T  16180665 gttaatgatgatttgaagttaattgatgatgtatagttggaattatgtgaa 16180715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1256 (Bit Score: 57; Significance: 7e-24; HSPs: 2)
Name: scaffold1256
Description:

Target: scaffold1256; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 88 - 160
Target Start/End: Original strand, 579 - 651
Alignment:
Q  88 attgttgtttatgtaaagtatcgttaatgatgatttgaagttgattgatgatttataattggaactatgtgaa 160  Q
    |||||||||||||| ||| || ||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  579 attgttgtttatgtgaagcattgttaatgatgatttgaagttgattgatgatttatagttggaactatgtgaa 651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1256; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 90 - 160
Target Start/End: Original strand, 681 - 751
Alignment:
Q  90 tgttgtttatgtaaagtatcgttaatgatgatttgaagttgattgatgatttataattggaactatgtgaa 160  Q
    |||||||||||| ||| || |||||| |||||||||||||||||||||||||||| |||||| ||||||||    
T  681 tgttgtttatgtgaagcattgttaattatgatttgaagttgattgatgatttatagttggaattatgtgaa 751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 55; Significance: 1e-22; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 90 - 160
Target Start/End: Original strand, 23492817 - 23492887
Alignment:
Q  90 tgttgtttatgtaaagtatcgttaatgatgatttgaagttgattgatgatttataattggaactatgtgaa 160  Q
    |||||||||||| ||| || ||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  23492817 tgttgtttatgtgaagcattgttaatgatgatttgaagttgattgatgatttatagttggaactatgtgaa 23492887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 90 - 160
Target Start/End: Original strand, 23498415 - 23498485
Alignment:
Q  90 tgttgtttatgtaaagtatcgttaatgatgatttgaagttgattgatgatttataattggaactatgtgaa 160  Q
    |||||||||||| ||| || ||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  23498415 tgttgtttatgtgaagcattgttaatgatgatttgaagttgattgatgatttatagttggaactatgtgaa 23498485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 91 - 160
Target Start/End: Original strand, 19958208 - 19958277
Alignment:
Q  91 gttgtttatgtaaagtatcgttaatgatgatttgaagttgattgatgatttataattggaactatgtgaa 160  Q
    ||||||||||| ||| || ||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  19958208 gttgtttatgtgaagcattgttaatgatgatttgaagttgattgatgatttatatttggaactatgtgaa 19958277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 89 - 160
Target Start/End: Complemental strand, 22555946 - 22555875
Alignment:
Q  89 ttgttgtttatgtaaagtatcgttaatgatgatttgaagttgattgatgatttataattggaactatgtgaa 160  Q
    ||||||||||||| ||| || ||||||||||||||||||||||||||| ||||||| |||||||||||||||    
T  22555946 ttgttgtttatgtgaagcattgttaatgatgatttgaagttgattgattatttatagttggaactatgtgaa 22555875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 110 - 160
Target Start/End: Original strand, 23492734 - 23492784
Alignment:
Q  110 gttaatgatgatttgaagttgattgatgatttataattggaactatgtgaa 160  Q
    ||||||||||||||||||||||||||||||||| | |||||||||||||||    
T  23492734 gttaatgatgatttgaagttgattgatgatttagagttggaactatgtgaa 23492784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 110 - 160
Target Start/End: Original strand, 23498332 - 23498382
Alignment:
Q  110 gttaatgatgatttgaagttgattgatgatttataattggaactatgtgaa 160  Q
    ||||||||||||||||||||||||||||||||| | |||||||||||||||    
T  23498332 gttaatgatgatttgaagttgattgatgatttagagttggaactatgtgaa 23498382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 110 - 142
Target Start/End: Complemental strand, 23991930 - 23991898
Alignment:
Q  110 gttaatgatgatttgaagttgattgatgattta 142  Q
    ||||||||||||| |||||||||||||||||||    
T  23991930 gttaatgatgattagaagttgattgatgattta 23991898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 110 - 142
Target Start/End: Complemental strand, 34962793 - 34962761
Alignment:
Q  110 gttaatgatgatttgaagttgattgatgattta 142  Q
    ||||||||||||| |||||||||||||||||||    
T  34962793 gttaatgatgattagaagttgattgatgattta 34962761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 55; Significance: 1e-22; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 90 - 160
Target Start/End: Complemental strand, 44891388 - 44891318
Alignment:
Q  90 tgttgtttatgtaaagtatcgttaatgatgatttgaagttgattgatgatttataattggaactatgtgaa 160  Q
    |||||||||||| ||| || ||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  44891388 tgttgtttatgtgaagcattgttaatgatgatttgaagttgattgatgatttatagttggaactatgtgaa 44891318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 90 - 160
Target Start/End: Original strand, 17904357 - 17904427
Alignment:
Q  90 tgttgtttatgtaaagtatcgttaatgatgatttgaagttgattgatgatttataattggaactatgtgaa 160  Q
    ||||||| |||| ||| || ||||||||||||||||||| ||||||||||||||| |||||||||||||||    
T  17904357 tgttgttaatgtgaagcatggttaatgatgatttgaagtcgattgatgatttatagttggaactatgtgaa 17904427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 90 - 160
Target Start/End: Original strand, 24721121 - 24721191
Alignment:
Q  90 tgttgtttatgtaaagtatcgttaatgatgatttgaagttgattgatgatttataattggaactatgtgaa 160  Q
    |||||||||||| ||| ||  ||||||||||||||||||| |||||||||||||| || ||| ||||||||    
T  24721121 tgttgtttatgtgaagcattattaatgatgatttgaagttaattgatgatttatagttagaattatgtgaa 24721191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 90 - 160
Target Start/End: Complemental strand, 45473922 - 45473852
Alignment:
Q  90 tgttgtttatgtaaagtatcgttaatgatgatttgaagttgattgatgatttataattggaactatgtgaa 160  Q
    |||||||||||| ||| || |||||||||||||  ||||| |||||||||||||| |||||| ||||||||    
T  45473922 tgttgtttatgtgaagcattgttaatgatgattcaaagttaattgatgatttatagttggaattatgtgaa 45473852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 113 - 160
Target Start/End: Complemental strand, 6833033 - 6832986
Alignment:
Q  113 aatgatgatttgaagttgattgatgatttataattggaactatgtgaa 160  Q
    ||||||||||||||||| |||||||||||||| |||||| ||||||||    
T  6833033 aatgatgatttgaagttaattgatgatttatagttggaattatgtgaa 6832986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 89 - 160
Target Start/End: Complemental strand, 44891298 - 44891227
Alignment:
Q  89 ttgttgtttatgtaaagtatcgttaatgatgatttgaagttgattgatgatttataattggaactatgtgaa 160  Q
    |||||||||||||  |  || |||||||||||||||||||| ||||||||| |||| |||||| ||||||||    
T  44891298 ttgttgtttatgtggaccattgttaatgatgatttgaagttaattgatgatgtatagttggaattatgtgaa 44891227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 161
Target Start/End: Complemental strand, 12709875 - 12709839
Alignment:
Q  125 aagttgattgatgatttataattggaactatgtgaaa 161  Q
    ||||| ||||||||||||||||||||| |||||||||    
T  12709875 aagttaattgatgatttataattggaattatgtgaaa 12709839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 110 - 142
Target Start/End: Original strand, 14239064 - 14239096
Alignment:
Q  110 gttaatgatgatttgaagttgattgatgattta 142  Q
    ||||||||||||| |||||||||||||||||||    
T  14239064 gttaatgatgattagaagttgattgatgattta 14239096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 53; Significance: 2e-21; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 92 - 164
Target Start/End: Complemental strand, 26646438 - 26646366
Alignment:
Q  92 ttgtttatgtaaagtatcgttaatgatgatttgaagttgattgatgatttataattggaactatgtgaaatat 164  Q
    |||||||||| ||| || ||| ||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  26646438 ttgtttatgtgaagcattgttgatgatgatttgaagttgattgatgatttatagttggaactatgtgaaatat 26646366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 89 - 160
Target Start/End: Original strand, 6551786 - 6551857
Alignment:
Q  89 ttgttgtttatgtaaagtatcgttaatgatgatttgaagttgattgatgatttataattggaactatgtgaa 160  Q
    ||||||||||||| ||  || ||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  6551786 ttgttgtttatgtgaaacatggttaatgatgatttgaagttgattgatgatttatagttggaactatgtgaa 6551857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 93 - 160
Target Start/End: Original strand, 6551916 - 6551983
Alignment:
Q  93 tgtttatgtaaagtatcgttaatgatgatttgaagttgattgatgatttataattggaactatgtgaa 160  Q
    ||||||||| ||| || ||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  6551916 tgtttatgtgaagcatggttaatgatgatttgaagttgattgatgatttatagttggaactatgtgaa 6551983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 90 - 161
Target Start/End: Complemental strand, 12354922 - 12354851
Alignment:
Q  90 tgttgtttatgtaaagtatcgttaatgatgatttgaagttgattgatgatttataattggaactatgtgaaa 161  Q
    |||||||||||| ||| || |||| |||||||||||||||||||||||||||||| |||||| |||||||||    
T  12354922 tgttgtttatgtgaagcattgttattgatgatttgaagttgattgatgatttatagttggaattatgtgaaa 12354851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 110 - 160
Target Start/End: Original strand, 14027168 - 14027218
Alignment:
Q  110 gttaatgatgatttgaagttgattgatgatttataattggaactatgtgaa 160  Q
    |||||||||||||||||||| |||||||||||||| |||||| ||||||||    
T  14027168 gttaatgatgatttgaagttaattgatgatttatagttggaattatgtgaa 14027218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 96 - 151
Target Start/End: Original strand, 8834459 - 8834514
Alignment:
Q  96 ttatgtaaagtatcgttaatgatgatttgaagttgattgatgatttataattggaa 151  Q
    |||||| ||| || |||||||||||||||||||| ||||||||| |||| ||||||    
T  8834459 ttatgtgaagcattgttaatgatgatttgaagttaattgatgatgtatagttggaa 8834514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 110 - 160
Target Start/End: Original strand, 8505025 - 8505075
Alignment:
Q  110 gttaatgatgatttgaagttgattgatgatttataattggaactatgtgaa 160  Q
    ||||||||||||| |||||| ||||||||| |||| ||| |||||||||||    
T  8505025 gttaatgatgattcgaagttaattgatgatgtatagttgaaactatgtgaa 8505075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0231 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: scaffold0231
Description:

Target: scaffold0231; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 89 - 160
Target Start/End: Original strand, 19129 - 19200
Alignment:
Q  89 ttgttgtttatgtaaagtatcgttaatgatgatttgaagttgattgatgatttataattggaactatgtgaa 160  Q
    ||||||||||||| ||| || ||||||||||||||||||||||||||||||||||| ||||||||| |||||    
T  19129 ttgttgtttatgtgaagcattgttaatgatgatttgaagttgattgatgatttatagttggaactaagtgaa 19200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0063 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 89 - 160
Target Start/End: Complemental strand, 61518 - 61447
Alignment:
Q  89 ttgttgtttatgtaaagtatcgttaatgatgatttgaagttgattgatgatttataattggaactatgtgaa 160  Q
    ||||||||||||| ||| || |||||||||||||||||||| |||||||||||||| |||||||||||||||    
T  61518 ttgttgtttatgtgaagcattgttaatgatgatttgaagttaattgatgatttatagttggaactatgtgaa 61447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 51; Significance: 2e-20; HSPs: 2)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 90 - 160
Target Start/End: Complemental strand, 39669 - 39599
Alignment:
Q  90 tgttgtttatgtaaagtatcgttaatgatgatttgaagttgattgatgatttataattggaactatgtgaa 160  Q
    |||||||||||| ||| || | ||||||||||||||||||||||||||||||||| |||||||||||||||    
T  39669 tgttgtttatgtgaagcattggtaatgatgatttgaagttgattgatgatttatagttggaactatgtgaa 39599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 90 - 160
Target Start/End: Complemental strand, 39569 - 39499
Alignment:
Q  90 tgttgtttatgtaaagtatcgttaatgatgatttgaagttgattgatgatttataattggaactatgtgaa 160  Q
    |||||||||||| ||| || |||||||| |||||||||||||||||||||||||| |||||||||| ||||    
T  39569 tgttgtttatgtgaagcattgttaatgaagatttgaagttgattgatgatttatagttggaactatatgaa 39499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0108 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: scaffold0108
Description:

Target: scaffold0108; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 90 - 160
Target Start/End: Original strand, 8221 - 8291
Alignment:
Q  90 tgttgtttatgtaaagtatcgttaatgatgatttgaagttgattgatgatttataattggaactatgtgaa 160  Q
    |||||||||||| ||| || ||||||||||||||||||||||||||||||||||  || ||||||||||||    
T  8221 tgttgtttatgtgaagcattgttaatgatgatttgaagttgattgatgatttattgtttgaactatgtgaa 8291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 6e-18; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 90 - 160
Target Start/End: Original strand, 2718068 - 2718138
Alignment:
Q  90 tgttgtttatgtaaagtatcgttaatgatgatttgaagttgattgatgatttataattggaactatgtgaa 160  Q
    |||||||||||| ||| || |||||||||||||||||||| |||||||||||||| |||||| ||||||||    
T  2718068 tgttgtttatgtgaagcattgttaatgatgatttgaagttaattgatgatttatagttggaattatgtgaa 2718138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 90 - 160
Target Start/End: Original strand, 36733872 - 36733942
Alignment:
Q  90 tgttgtttatgtaaagtatcgttaatgatgatttgaagttgattgatgatttataattggaactatgtgaa 160  Q
    |||||||||||| ||| || |||||||||||||||||||| |||||||||||||| |||||| ||||||||    
T  36733872 tgttgtttatgtgaagcattgttaatgatgatttgaagttaattgatgatttatagttggaattatgtgaa 36733942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 90 - 161
Target Start/End: Complemental strand, 22473180 - 22473109
Alignment:
Q  90 tgttgtttatgtaaagtatcgttaatgatgatttgaagttgattgatgatttataattggaactatgtgaaa 161  Q
    ||||||| |||| ||| || |||||||||||||||||||| |||||||||||||| |||||| |||||||||    
T  22473180 tgttgttcatgtgaagcattgttaatgatgatttgaagttaattgatgatttatagttggaattatgtgaaa 22473109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 90 - 160
Target Start/End: Complemental strand, 22473280 - 22473210
Alignment:
Q  90 tgttgtttatgtaaagtatcgttaatgatgatttgaagttgattgatgatttataattggaactatgtgaa 160  Q
    ||||||| |||| ||| || |||||||||||||||||||| |||||||||||||| |||||| ||||||||    
T  22473280 tgttgttcatgtgaagcattgttaatgatgatttgaagttaattgatgatttatagttggaattatgtgaa 22473210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 96 - 160
Target Start/End: Original strand, 6574350 - 6574414
Alignment:
Q  96 ttatgtaaagtatcgttaatgatgatttgaagttgattgatgatttataattggaactatgtgaa 160  Q
    |||||||||| || |||||||||||||||||||| ||||||||| |||| |||||| ||||||||    
T  6574350 ttatgtaaagcattgttaatgatgatttgaagttaattgatgatgtatagttggaattatgtgaa 6574414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 93 - 160
Target Start/End: Original strand, 18820422 - 18820489
Alignment:
Q  93 tgtttatgtaaagtatcgttaatgatgatttgaagttgattgatgatttataattggaactatgtgaa 160  Q
    ||||||||| ||| || |||||||||||||| |||||||||||||||||| | ||||||| |||||||    
T  18820422 tgtttatgtgaagcattgttaatgatgattttaagttgattgatgatttacagttggaacaatgtgaa 18820489  T

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Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 89 - 160
Target Start/End: Original strand, 36406297 - 36406368
Alignment:
Q  89 ttgttgtttatgtaaagtatcgttaatgatgatttgaagttgattgatgatttataattggaactatgtgaa 160  Q
    ||||||||||||| ||| || ||||||||||||||||| || ||||||||||||||  ||||| ||||||||    
T  36406297 ttgttgtttatgtgaagcattgttaatgatgatttgaaattaattgatgatttatagatggaattatgtgaa 36406368  T

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Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 110 - 160
Target Start/End: Original strand, 18820339 - 18820389
Alignment:
Q  110 gttaatgatgatttgaagttgattgatgatttataattggaactatgtgaa 160  Q
    |||||||||||||| |||||||||||||| ||||| |||||||||||||||    
T  18820339 gttaatgatgatttaaagttgattgatgaattatagttggaactatgtgaa 18820389  T

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Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 110 - 142
Target Start/End: Original strand, 16414120 - 16414152
Alignment:
Q  110 gttaatgatgatttgaagttgattgatgattta 142  Q
    ||||||||||||| |||||||||||||||||||    
T  16414120 gttaatgatgattagaagttgattgatgattta 16414152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 110 - 142
Target Start/End: Complemental strand, 32121155 - 32121123
Alignment:
Q  110 gttaatgatgatttgaagttgattgatgattta 142  Q
    ||||||||||||| |||||||||||||||||||    
T  32121155 gttaatgatgattagaagttgattgatgattta 32121123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 4e-16; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 89 - 160
Target Start/End: Original strand, 9744447 - 9744518
Alignment:
Q  89 ttgttgtttatgtaaagtatcgttaatgatgatttgaagttgattgatgatttataattggaactatgtgaa 160  Q
    ||||||||||||| ||| || | |||||||||||||||||| | |||||||||||| |||||||||||||||    
T  9744447 ttgttgtttatgtgaagcattgctaatgatgatttgaagttaaatgatgatttatagttggaactatgtgaa 9744518  T

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Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 90 - 160
Target Start/End: Original strand, 9744357 - 9744427
Alignment:
Q  90 tgttgtttatgtaaagtatcgttaatgatgatttgaagttgattgatgatttataattggaactatgtgaa 160  Q
    |||||||||||| ||| ||   |||||||||||||||||||||| |||||||||| |||||||||||||||    
T  9744357 tgttgtttatgtgaagcatgactaatgatgatttgaagttgattaatgatttatagttggaactatgtgaa 9744427  T

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Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 90 - 160
Target Start/End: Original strand, 15577259 - 15577329
Alignment:
Q  90 tgttgtttatgtaaagtatcgttaatgatgatttgaagttgattgatgatttataattggaactatgtgaa 160  Q
    |||||||||||| ||| || |||||||||||||| ||||| |||||||||||||| ||| || ||||||||    
T  15577259 tgttgtttatgtgaagcattgttaatgatgatttaaagttaattgatgatttatagttgaaattatgtgaa 15577329  T

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Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 110 - 160
Target Start/End: Original strand, 13134276 - 13134326
Alignment:
Q  110 gttaatgatgatttgaagttgattgatgatttataattggaactatgtgaa 160  Q
    |||||||||||||||||||| ||||||||| |||| |||||| ||||||||    
T  13134276 gttaatgatgatttgaagttaattgatgatgtatagttggaattatgtgaa 13134326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 114 - 159
Target Start/End: Original strand, 20253970 - 20254015
Alignment:
Q  114 atgatgatttgaagttgattgatgatttataattggaactatgtga 159  Q
    ||||||||||||||||||||||||||||||| || ||| |||||||    
T  20253970 atgatgatttgaagttgattgatgatttatagtttgaattatgtga 20254015  T

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Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 47
Target Start/End: Original strand, 9744357 - 9744400
Alignment:
Q  4 tgttgtttatgtgaagtatcactaaagatgatttgaagttgatt 47  Q
    |||||||||||||||| || ||||| ||||||||||||||||||    
T  9744357 tgttgtttatgtgaagcatgactaatgatgatttgaagttgatt 9744400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 47 - 90
Target Start/End: Original strand, 9744357 - 9744400
Alignment:
Q  47 tgttgtttatgtgaagtatcactaaagatgatttgaagttgatt 90  Q
    |||||||||||||||| || ||||| ||||||||||||||||||    
T  9744357 tgttgtttatgtgaagcatgactaatgatgatttgaagttgatt 9744400  T

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Target: scaffold0453 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0453
Description:

Target: scaffold0453; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 114 - 160
Target Start/End: Original strand, 6012 - 6058
Alignment:
Q  114 atgatgatttgaagttgattgatgatttataattggaactatgtgaa 160  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||    
T  6012 atgatgatttgaagttgattgatgatttatagttggaactatgtgaa 6058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0213 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0213
Description:

Target: scaffold0213; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 90 - 160
Target Start/End: Complemental strand, 17924 - 17854
Alignment:
Q  90 tgttgtttatgtaaagtatcgttaatgatgatttgaagttgattgatgatttataattggaactatgtgaa 160  Q
    |||||||||||| |||  | |||||||||||||||||||| |||||||||||||| |||||| ||||||||    
T  17924 tgttgtttatgtgaagctttgttaatgatgatttgaagttaattgatgatttatagttggaattatgtgaa 17854  T

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Target: scaffold0628 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0628
Description:

Target: scaffold0628; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 93 - 160
Target Start/End: Original strand, 4850 - 4918
Alignment:
Q  93 tgtttatgtaaagtatcgttaatgatgatttgaagttg-attgatgatttataattggaactatgtgaa 160  Q
    ||||||||| ||| || |||||||| |||||||||||| |||||||||||||| |||||||| ||||||    
T  4850 tgtttatgtgaagcattgttaatgaagatttgaagttgaattgatgatttatagttggaactttgtgaa 4918  T

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Target: scaffold0113 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0113
Description:

Target: scaffold0113; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 110 - 161
Target Start/End: Complemental strand, 33594 - 33543
Alignment:
Q  110 gttaatgatgatttgaagttgattgatgatttataattggaactatgtgaaa 161  Q
    |||||||||||||||||||| | ||||||| |||| |||||| |||||||||    
T  33594 gttaatgatgatttgaagttaaatgatgatgtatagttggaattatgtgaaa 33543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0439 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0439
Description:

Target: scaffold0439; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 111 - 160
Target Start/End: Complemental strand, 3184 - 3135
Alignment:
Q  111 ttaatgatgatttgaagttgattgatgatttataattggaactatgtgaa 160  Q
    |||||||||||| |||||| ||||||||| |||| |||||| ||||||||    
T  3184 ttaatgatgattcgaagttaattgatgatgtatagttggaattatgtgaa 3135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0716 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0716
Description:

Target: scaffold0716; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 110 - 142
Target Start/End: Complemental strand, 4122 - 4090
Alignment:
Q  110 gttaatgatgatttgaagttgattgatgattta 142  Q
    ||||||||||||| |||||||||||||||||||    
T  4122 gttaatgatgattagaagttgattgatgattta 4090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 110 - 162
Target Start/End: Original strand, 66627 - 66679
Alignment:
Q  110 gttaatgatgatttgaagttgattgatgatttataattggaactatgtgaaat 162  Q
    |||||| ||||||||||||| |||||||||  ||| |||||| ||||||||||    
T  66627 gttaataatgatttgaagttaattgatgatgcatagttggaattatgtgaaat 66679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0023 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 110 - 142
Target Start/End: Original strand, 18433 - 18465
Alignment:
Q  110 gttaatgatgatttgaagttgattgatgattta 142  Q
    ||||||||||||| |||||||||||||||||||    
T  18433 gttaatgatgattagaagttgattgatgattta 18465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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