View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0768_low_8 (Length: 489)
Name: NF0768_low_8
Description: NF0768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0768_low_8 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 462; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 462; E-Value: 0
Query Start/End: Original strand, 24 - 489
Target Start/End: Original strand, 35696302 - 35696767
Alignment:
| Q |
24 |
tcatcacaacaatgtcgatgctagcacctcccttccaactcctagaaatcaacgtcatatcagcacaagacctcgcacccgtttctaaatcaatcaaagc |
123 |
Q |
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| T |
35696302 |
tcatcacaacaatgtcgatgctagcacctcccttccaactcctagaaatcaacgtcatatcagcacaagacctcgcacccgtttctaaatcaatcaaagc |
35696401 |
T |
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| Q |
124 |
ctatgcagttgcatggctcaatccagaacgtaaacttaccacccaagcagaccctcatggtcataacaaccctacctggaatgaaaaatttgttttccgc |
223 |
Q |
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| T |
35696402 |
ctatgcagttgcatggctcaatccagaacgtaaacttaccacccaagcagaccctcatggtcataacaaccctacctggaatgaaaaatttgttttccgc |
35696501 |
T |
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| Q |
224 |
gtcgacgatgatttcctcctatcagaagagtctgtcattatgattgaaatctatgcctctgcttggctccgtgatgttctcattggaactgtcgctgttc |
323 |
Q |
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| T |
35696502 |
gtcgacgatgatttcctcctatcagaagagtctgtcattatgattgaaatctatgcctctgcttggctccgtgatgttctcattggaactgtcgctgttc |
35696601 |
T |
|
| Q |
324 |
atctcaacaatcttttacctcgtaacagaaaatccaagattcgtttcgttgccttgcaggttcgtcgaccttctggtcgtccacaagggattcttaacat |
423 |
Q |
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| T |
35696602 |
atctcaacaatcttttacctcgtaacagaaaatccaagattcgtttcgttgccttgcaggttcgtcgaccttctggtcgtccacaagggattcttaacat |
35696701 |
T |
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| Q |
424 |
tggtgttaatgttgtcgatgctacgatgagaagcatgccgatgtattcggagcttagttcttcggc |
489 |
Q |
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| T |
35696702 |
tggtgttaatgttgttgatgctacgatgagaagcatgccgatgtattcggagcttagttcttcggc |
35696767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 200 - 312
Target Start/End: Complemental strand, 47725572 - 47725460
Alignment:
| Q |
200 |
tggaatgaaaaatttgttttccgcgtcgacgatgatttcctcctatcagaagagtctgtcattatgattgaaatctatgcctctgcttggctccgtgatg |
299 |
Q |
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|||||||| |||||||||||||||||||| |||| || ||| |||||| ||||| || |||||||||||||| |||||||||||||||||| |
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| T |
47725572 |
tggaatgagaaatttgttttccgcgtcgataatgaatttctcaattcagaaagttctgttatcatgattgaaatctacaattctgcttggctccgtgata |
47725473 |
T |
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| Q |
300 |
ttctcattggaac |
312 |
Q |
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| T |
47725472 |
ttctcattggaac |
47725460 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 398 - 477
Target Start/End: Complemental strand, 47725359 - 47725280
Alignment:
| Q |
398 |
ggtcgtccacaagggattcttaacattggtgttaatgttg-tcgatgctacgatgagaagcatgccgatgtattcggagct |
477 |
Q |
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|||||||||||||||||||||||||| |||||| | |||| ||||| ||||||||||||||||| | ||||||||||| |
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| T |
47725359 |
ggtcgtccacaagggattcttaacatcggtgtt-acgttgctcgatagcacgatgagaagcatgccactttattcggagct |
47725280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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