View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0769_high_1 (Length: 572)
Name: NF0769_high_1
Description: NF0769
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0769_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 504; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 504; E-Value: 0
Query Start/End: Original strand, 16 - 543
Target Start/End: Original strand, 50595170 - 50595697
Alignment:
| Q |
16 |
atccaatgcatcaccataacaacccattctcccatacccagttatcatagtcgtccaagacacaattgtcctaacaggcatgtcatcaaacagttccctt |
115 |
Q |
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| T |
50595170 |
atccaatgcatcaccataacaacccattctcccatacccagttatcatagtcgtccaagacacaattgtcctaacaggcatgtcatcaaacagttccctt |
50595269 |
T |
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| Q |
116 |
gccctattcatctgccccaatttcacatacccaaatatcaaactattccaagaaatcacatctctatgactcatttcctcaaataccttgcacgcattgg |
215 |
Q |
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| T |
50595270 |
gcactattcatctgccccaatttcacatacccaaatatcaaactattccaagaaatcacatctctatgactcatttcctcaaataccttgcacgcattgg |
50595369 |
T |
|
| Q |
216 |
ttaaatccccaaattttgtatacatatcaatcaacgcattctcggttatacagtgagaatcagctccaaatttgtaaactagcccatgaacctgcatacc |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50595370 |
ttaaatccccaaattttgtatacatatcaatcaacgcattctcggttatacagtgaaaatcagctccaaatttgtaaactagcccatgaacctgcatacc |
50595469 |
T |
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| Q |
316 |
aagccggtgacacagaattcccgtgcatgatttaatcacaaaagggaacgtgaatttgtctggaaaaactgaatttgttgaatgtgtgagcatttgaatg |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
50595470 |
aagccggtgacacagaattcccgtgcatgatttaatcacaaaagggaacgtgaatttgtctggaaaaactgaatttgttgaatgtgtgagcatttgaacg |
50595569 |
T |
|
| Q |
416 |
aagacagagattgccgaagaatggtggcgattgtgagcgtaggttctgatgatagcgttgtaggtgaagatatttgggtgaaggagttgcttgaagagca |
515 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50595570 |
aagacagagattgctgaagaatggtggcgattgtgagcgtaggttctgatgatagcgttgtaggtgaagatatttgggtgaaggagttgcttgaagagca |
50595669 |
T |
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| Q |
516 |
aggtagcgtaacgcacgtgacccaagtt |
543 |
Q |
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| T |
50595670 |
gggtagcgtaactcacgtgacccaagtt |
50595697 |
T |
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