View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0769_high_13 (Length: 332)
Name: NF0769_high_13
Description: NF0769
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0769_high_13 |
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Alignment Details
Target: chr4 (Bit Score: 137; Significance: 2e-71; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 164 - 324
Target Start/End: Original strand, 35204745 - 35204905
Alignment:
| Q |
164 |
ccaaggtatacatactctcaagcgctgtcagataatcctttttaagcttcaaataaccaaccactacatgcatttcatacaaaatattatttgacgtgtt |
263 |
Q |
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| T |
35204745 |
ccaaggtatacatactctcaagcggtgtcaaataatcctttttaagcttcaaataaccaaccactacatgcatttcatacaaaatattatttgacgtgtt |
35204844 |
T |
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| Q |
264 |
agttcactatatatgaattgcatctaagaatttttgtttatagttcatgtcaattcatctc |
324 |
Q |
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| T |
35204845 |
aattcactctatacgaattgcatctaagaattgttgtttatagttcatgtcaattcatctc |
35204905 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 10 - 108
Target Start/End: Original strand, 35204591 - 35204689
Alignment:
| Q |
10 |
aacaatgtgatgaatttagttgttacggtcttacaattctatggacaaaattggatatttactccttgttttccctccacttcatctactgcatctatg |
108 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35204591 |
aacaatgtgatgaatttagttgttacggtcttacaattctatggacaaaattggatatttactccttgttttccctccacttcatctactgcatctatg |
35204689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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