View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0769_high_23 (Length: 251)
Name: NF0769_high_23
Description: NF0769
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0769_high_23 |
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Alignment Details
Target: chr2 (Bit Score: 149; Significance: 8e-79; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 1 - 153
Target Start/End: Original strand, 34672461 - 34672613
Alignment:
| Q |
1 |
tatatcatgcatccctcaaaatcctactgttccactcaaagctacatccacatctatccagtcctcactctcttcccctaacccacccatctcaaaggaa |
100 |
Q |
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| T |
34672461 |
tatatcatgcatccctcaaaatcctaccgttccactcaaagctacatccacatctatccagtcctcactctcttcccctaacccacccatctcaaaggaa |
34672560 |
T |
|
| Q |
101 |
gatgctatacttcaagccaaaacatccctttcaacaaccttagagaagcccct |
153 |
Q |
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| T |
34672561 |
gatgctatacttcaagccaaaacatccctttcaacaaccttagagaagcccct |
34672613 |
T |
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Back To:
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Target: chr6 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 62 - 151
Target Start/End: Complemental strand, 34005664 - 34005576
Alignment:
| Q |
62 |
tcctcactctcttcccctaacccacccatctcaaaggaagatgctatacttcaagccaaaacatccctttcaacaaccttagagaagccc |
151 |
Q |
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||||||||||||||| ||||| || |||||||||| |||||| |||||||||||||||||| ||||||||| |||||| ||||||||| |
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| T |
34005664 |
tcctcactctcttccg-taacctactcatctcaaagtaagatgtcatacttcaagccaaaacacccctttcaaaaaccttggagaagccc |
34005576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 62 - 151
Target Start/End: Complemental strand, 55686056 - 55685968
Alignment:
| Q |
62 |
tcctcactctcttcccctaacccacccatctcaaaggaagatgctatacttcaagccaaaacatccctttcaacaaccttagagaagccc |
151 |
Q |
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||||||||||||||| ||||| || |||||||||| |||||| |||||||||||||||||||||||||||| |||||| |||||||| |
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| T |
55686056 |
tcctcactctcttccg-taacctactcatctcaaagtaagatgtcatacttcaagccaaaacatccctttcaaaaaccttgtagaagccc |
55685968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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