View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0769_low_1 (Length: 615)
Name: NF0769_low_1
Description: NF0769
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0769_low_1 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 380; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 98 - 615
Target Start/End: Complemental strand, 2629725 - 2629211
Alignment:
| Q |
98 |
attgtttgggtaagagaaatttacttccctcacaacaacaac---tacaattggtctccagctttagttaaatcttccaacaacctcggcatctcacttt |
194 |
Q |
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| T |
2629725 |
attgtttgggtaagagaaattcagttccctcacaacaacaacaactacaattggtctccagctttagttacatcttccaaccacctcggcatctcacttt |
2629626 |
T |
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| Q |
195 |
ccttcttcaacaaccccaaccccacacaacgcaccttctttcttcaatccgaggttattcctttcgatgaattacccttttcaaacgatacatttcaatg |
294 |
Q |
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| T |
2629625 |
ccttcttcaacaaccccaacaccacacaacgcaccttctttcttcaatccgaagttattcctttcgatgaattacccttttcaaacgatacatttcaatg |
2629526 |
T |
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| Q |
295 |
cgaagcgttccgttctgcacttaggttattcggtctcagaatcgtttcaagtttgcggtgtcgttgtataacggctcataaccaagatgtagatgagagg |
394 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||| ||| |||||| |
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| T |
2629525 |
cgaagccttccgttctgcacttaggttattcggtctcagaatcgtttcaagtttgcggtgccgttgtataacgggtcataacca------agaggagagg |
2629432 |
T |
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| Q |
395 |
gttttacacgggtcgggttatcagtttgacccggttggagttttggcttttgttttagaagctgctgttttgccttgggttgaggattcgcgcgctgttg |
494 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||| | ||||||| |
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| T |
2629431 |
gttttacacgggtcgggttatcagtttgacccggttggagttttggcttttgttttagatgctgctgttttgccttgggttgaggcttcgtgtgctgttg |
2629332 |
T |
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| Q |
495 |
atgctgttaaagttgttgggcagattcatgcttttcgtgagtactctactattcaccagaagaaagtctacaaagaagctacaaaattaggtattttgtt |
594 |
Q |
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||||||||||||| |||| ||| |||||||||||||| | |||||| | ||| | |||||||||||||||| ||||||| ||||||||||||||||||| |
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| T |
2629331 |
atgctgttaaagtcgttgctcaggttcatgcttttcgtcactactcttcaattaagcagaagaaagtctacagagaagctccaaaattaggtattttgtt |
2629232 |
T |
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| Q |
595 |
tttaatctttttcttataaaa |
615 |
Q |
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| T |
2629231 |
tttaatctttttcttataaaa |
2629211 |
T |
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