View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0769_low_10 (Length: 444)
Name: NF0769_low_10
Description: NF0769
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0769_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 12 - 432
Target Start/End: Complemental strand, 8143170 - 8142757
Alignment:
| Q |
12 |
acagaggaaaaggatacacaaacatctccggagtacatatcagactaataagttgtattaggactacaagacaactgtgtcgtaaagatatcagacannn |
111 |
Q |
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| T |
8143170 |
acagaggaaaaggattcacaaacatctcgggagtacatatcagactcataagttgtattaggggtacaagacaaccgtgtagtaaagatatcagacattt |
8143071 |
T |
|
| Q |
112 |
nnnnnccnnnnnnnntaaaattaattgttcgatacttccttaatttatatcagccacgtatcaatatcggtatcagatgcatgttggacatgatacttta |
211 |
Q |
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| T |
8143070 |
ttttcc--aaaaaaataaaattaattgtctgatacttcattgatttatattagccgcatatcagtatcagtatcagatgcgcgttggacatgatacttta |
8142973 |
T |
|
| Q |
212 |
ccatttttaaggtattggggcttcagagtgcatcatttaacccttctattttactagaaagttcattttcatcatcaccatatcctaataactgaggtaa |
311 |
Q |
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| T |
8142972 |
ccattttaaaggtattgaggcttcatagtacatcatttaacccttctattttactagaaagttcattttcatcatcaccatatcctaataactgaggtaa |
8142873 |
T |
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| Q |
312 |
cccactttgttaggaattaaaactatatccaatatttaatgccctttaacaaaagttgactgatgatcagcttgtacctatctgatgatcgactcaatct |
411 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||| |
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| T |
8142872 |
cccactttgttaggaattaaaactatatccaatatttgatgccctttaacaaaagttgattgatga-----ttgtacctatctgatgatcgactcaatct |
8142778 |
T |
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| Q |
412 |
cttcgcacaaaccttagacaa |
432 |
Q |
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| T |
8142777 |
cttcgcacaaaccttagacaa |
8142757 |
T |
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